Locus 2914

Sequence ID 2L_DroMel_CAF1
Location 8,389,714 – 8,389,823
Length 109
Max. P 0.540572
window4623 window4624

overview

Window 3

Location 8,389,714 – 8,389,823
Length 109
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 84.37
Mean single sequence MFE -32.33
Consensus MFE -27.10
Energy contribution -26.21
Covariance contribution -0.89
Combinations/Pair 1.24
Mean z-score -1.46
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.540572
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8389714 109 + 22407834
GGUCCAAACGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACAUAAACGGUCGGCUAGGCACAGACAAAAGCCGUCCACAAAUUUU-UUU---------
(.((((....(.((((((((..((((.((......)).)))).)))))))).).)))).)........((.(((((..(......)...))))).)).........-...--------- ( -31.00)
>DroVir_CAF1 13377 110 + 1
AGUUGGGUUGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACAUAAACGAACGGCGGGGCACAAGACGAAGCCGUUCACACGUUUUUUUU---------
.(((....((((((((((((..((((.((......)).)))).)))))))........)))))..)))(((((((..(........)...))))))).............--------- ( -31.40)
>DroGri_CAF1 11958 109 + 1
UA-CCUUCUGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACACAAACGAGCGGCUUGGCACAAGACAAGGUCGUUCACAAGUUUUUUUU---------
..-((.(((...((((((((..((((.((......)).)))).))))))))))).))...........((((((((((........))).))))))).............--------- ( -30.90)
>DroEre_CAF1 11319 119 + 1
AGUGCAAACGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACAUAAAUGGUCGGCUAGGCACAAGACAAAGCCGUCCACAAUUUUUUUUUUGUUUCGCA
.(((.(((((((((((((((..((((.((......)).)))).)))))))........)))).....(((.(((((..((....).)..))))).))).............))))))). ( -34.30)
>DroMoj_CAF1 12849 110 + 1
AGCUCAUUUGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACACAAACGAACGGCUAGGCACAAGACGAUGCCGUUCACAAGUUUUUUUU---------
((((..(((((((.((((.(..((((.((......)).))))(((.....))).).))))))))))).(((((((..(........)...)))))))...))))......--------- ( -32.40)
>DroAna_CAF1 11001 110 + 1
CGCGUACCUGUGUUGUUUGAAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACAUAAACGGUCGGCUGGGCACAAGACAAAGCCGACCACAAGUUUUUUUU---------
.(.((.((..(.(((((((...((((.((......)).))))..))))))).)..)).)).)......((((((((..((....).)..)))))))).............--------- ( -34.00)
>consensus
AGUCCAAAUGUGUUGUUUGGAAGGAGAGCAAGUUAGCACUCCCCUAGACAAGGAUGGAACACAUAAACGAUCGGCUAGGCACAAGACAAAGCCGUCCACAAGUUUUUUUU_________
.........((((.((((.(..((((.((......)).))))(((.....))).).))))))))....(((((((...............)))))))...................... (-27.10 = -26.21 +  -0.89)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 4

Location 8,389,714 – 8,389,823
Length 109
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 84.37
Mean single sequence MFE -31.07
Consensus MFE -23.39
Energy contribution -22.69
Covariance contribution -0.69
Combinations/Pair 1.14
Mean z-score -1.73
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.528299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8389714 109 - 22407834
---------AAA-AAAAUUUGUGGACGGCUUUUGUCUGUGCCUAGCCGACCGUUUAUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACGUUUGGACC
---------...-.........((.(((((...((....))..))))).))...............(((.....)))((((.((......)).)))).(((((((.....))))))).. ( -29.20)
>DroVir_CAF1 13377 110 - 1
---------AAAAAAAACGUGUGAACGGCUUCGUCUUGUGCCCCGCCGUUCGUUUAUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACAACCCAACU
---------.........(((((((((((...((.....))...)))))))((((...........(((.....)))((((.((......)).))))....)))).))))......... ( -28.80)
>DroGri_CAF1 11958 109 - 1
---------AAAAAAAACUUGUGAACGACCUUGUCUUGUGCCAAGCCGCUCGUUUGUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACAGAAGG-UA
---------.......(((((..(((((.((((.(....).))))....)))))..)(((((....(((.....)))((((.((......)).))))........)))))...)))-). ( -24.90)
>DroEre_CAF1 11319 119 - 1
UGCGAAACAAAAAAAAAAUUGUGGACGGCUUUGUCUUGUGCCUAGCCGACCAUUUAUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACGUUUGCACU
(((.((((............((((.(((((..((.....))..))))).))))....(((((....(((.....)))((((.((......)).))))........)))))))))))).. ( -33.60)
>DroMoj_CAF1 12849 110 - 1
---------AAAAAAAACUUGUGAACGGCAUCGUCUUGUGCCUAGCCGUUCGUUUGUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACAAAUGAGCU
---------.................(((((......))))).....(((((((((((((((....(((.....)))((((.((......)).)))).....))).)))))))))))). ( -34.50)
>DroAna_CAF1 11001 110 - 1
---------AAAAAAAACUUGUGGUCGGCUUUGUCUUGUGCCCAGCCGACCGUUUAUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUUCAAACAACACAGGUACGCG
---------.............((((((((..((.....))..))))))))......((((.((....((((..(((((((.((......)).)))))))...))))....)).)))). ( -35.40)
>consensus
_________AAAAAAAACUUGUGAACGGCUUUGUCUUGUGCCUAGCCGACCGUUUAUGUGUUCCAUCCUUGUCUAGGGGAGUGCUAACUUGCUCUCCUUCCAAACAACACAAAUGAACU
.....................(((.((((...............)))).)))....((((((....(((.....)))((((.((......)).))))........))))))........ (-23.39 = -22.69 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:23 2006