Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,387,861 – 8,387,963 |
Length | 102 |
Max. P | 0.659882 |
Location | 8,387,861 – 8,387,963 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -20.91 |
Energy contribution | -20.38 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.29 |
Mean z-score | -1.35 |
Structure conservation index | 0.93 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8387861 102 + 22407834 UCCAAUUAUCAUCGUAUU--------UUAUUUCACAGUCCUGCUGGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCCGUCAGCAGCUCAGCUUU ..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -25.50) >DroSec_CAF1 9488 102 + 1 UCCAAUUAUCAUCGUAUU--------UUAUGUCACAGUCCUGCUGGCCACCUGUAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGUUCAGCUUU ..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -23.80) >DroSim_CAF1 8621 102 + 1 UCCAAUUAUCAUCGUAUU--------UUAUUUCACAGUCCUGCUGGCCACCUGUAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGCUCAGCUUU ..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -22.90) >DroEre_CAF1 9514 102 + 1 UUUAAUCACUAUCGUAUU--------UUAUUUUACAGUCUUGCUAGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGCUCAGCUUU .............(((..--------......)))....((((((((...........((......))............))))))))((((((....))))))...... ( -20.00) >DroYak_CAF1 9611 102 + 1 CCCAAUCUUCAUCGCAUU--------UUCUUUAACAGUUUUGCUAGCCACCUGCAUUCCCAACCUGGGCUCCAUUAUCUCGCUGGUAGGUGCCGUCAGCAGCUCAGCUUU ..................--------..........(..(((((..((((((((...(((.....))).........(.....))))))))..)..)))))..)...... ( -18.90) >DroPer_CAF1 9211 109 + 1 UCCCCUUCUAAU-AUAUUCUGUUUAUUCCUUACACAGUUCUGUUGGCCACCUGCAUUCCCAAUCUGGGCUCUAUUAUUUCGUUGGUGGGAGCCGUCAGCAGCUCUGCAUU ............-.....................(((..((((((((....((......)).....((((((((((......)))).))))))))))))))..))).... ( -23.30) >consensus UCCAAUUAUCAUCGUAUU________UUAUUUCACAGUCCUGCUGGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCCGUCAGCAGCUCAGCUUU ....................................(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... (-20.91 = -20.38 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006