Locus 291

Sequence ID 2L_DroMel_CAF1
Location 837,586 – 837,678
Length 92
Max. P 0.529765
window462

overview

Window 2

Location 837,586 – 837,678
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.70
Mean single sequence MFE -28.60
Consensus MFE -16.39
Energy contribution -16.62
Covariance contribution 0.22
Combinations/Pair 1.14
Mean z-score -2.30
Structure conservation index 0.57
SVM decision value -0.01
SVM RNA-class probability 0.529765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 837586 92 - 22407834
AAGGCCAGCGCAAUUAAUUUGCGCAAUUAACUGAAAUUGAACGCCUAUUUGACGGGUCAUUCUGGUG----GGUACAAGUG--GGUCAAGCAACCACC
...(((.((((((.....)))))).................((((....(((....)))....))))----)))....(((--(.........)))). ( -25.50)
>DroVir_CAF1 4295 98 - 1
AAGGCCGAGCCAAUUAAUUUGUGCAAUUAUCUGAAAUUGAAUAUCCAUUUAGCGGGUCAUUCUGACCCGUUUGCUCAAGUGUCGGCCAUAAAACCCGA
..((((((........(((((.((((...........(((((....)))))(((((((.....))))))))))).))))).))))))........... ( -30.10)
>DroSec_CAF1 2585 92 - 1
AAGGCCAGCGCAAUUAAUUUGCGCAAUUAACUGAAAUUGAACGCCUAUUUGACGGGUCAUUCUGGUG----GGUACAAAUG--GGUCAAGCAACCACC
..((((.((((((.....)))))).............((..((((....(((....)))....))))----..))......--))))........... ( -24.20)
>DroSim_CAF1 2842 92 - 1
AAGGCCAGCGCAAUUAAUUUGCGCAAUUAACUGAAAUUAAACGCCUAUUUGACGGGUCAUUCUGGUG----GGUACAAGUG--GGUCAAGCAAACACC
..((((.((((((.....)))))).....(((.....((..((((....(((....)))....))))----..))..))).--))))........... ( -25.10)
>DroEre_CAF1 2663 92 - 1
AAGGCCAGCGCAAUUAAUUUGCGCAAUUAACUGAAAUUGAACGCCUAUUUGACGGGUCAUUCUGGUG----GCUACAAGUG--GGUCAGGCAACCACC
...(((.((((((.....))))))..................(((((((((...((((((....)))----))).))))))--)))..)))....... ( -31.40)
>DroAna_CAF1 2594 89 - 1
AAGGCCGGCGCAAUUCAUUUGCGCAAUUAACCAAAAUUGAACGGCCAUUUGCCGGGCCAUUCCG-------GGCCCAAGUG--GGUCAAAGAACCACC
..(((((((((((.....))))))((((......))))...))))).......(((((......-------)))))..(((--(.........)))). ( -35.30)
>consensus
AAGGCCAGCGCAAUUAAUUUGCGCAAUUAACUGAAAUUGAACGCCUAUUUGACGGGUCAUUCUGGUG____GGUACAAGUG__GGUCAAGCAACCACC
..((((.((((((.....))))))............................((((....))))...................))))........... (-16.39 = -16.62 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:10 2006