Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,371,558 – 8,371,653 |
Length | 95 |
Max. P | 0.500000 |
Location | 8,371,558 – 8,371,653 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 72.46 |
Mean single sequence MFE | -19.38 |
Consensus MFE | -11.81 |
Energy contribution | -12.77 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.15 |
Mean z-score | -1.40 |
Structure conservation index | 0.61 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8371558 95 + 22407834 AUUUAAUUCAGUCCGAAAACAAAUAUAUUCC-----------------AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA ...................((((((((((..-----------------((((((...((((((....(((((......)))))))))))...))))))...)))))))))). ( -22.30) >DroSec_CAF1 15354 99 + 1 AUUUAAUGCAUUGAGAAAACAAAUAUAUUCCAUCC-------------AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGG ...................((((((((((......-------------((((((...((((((....(((((......)))))))))))...))))))...)))))))))). ( -20.90) >DroSim_CAF1 14668 112 + 1 AUUUAAUGCAUUGAGAAAACAAAUAUAUUCCAUCCGUGUUAACUAAACACGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA ...................((((((((((......(((((.....)))))((((...((((((....(((((......)))))))))))...)))).....)))))))))). ( -24.10) >DroEre_CAF1 14352 78 + 1 -----------------AAAAAAUAUGUACC-----------------AAGCCAAACUUCAACUUCUGUUCCAAUUUAGGGACAUUGGACUGUAGCUUACAAAUGUGUUUCA -----------------...((((((((...-----------------((((.....(((((....((((((......))))))))))).....))))....)))))))).. ( -13.40) >DroYak_CAF1 14310 77 + 1 -----------------AA-AAAUAUAUAUU-----------------AAGCUUAACUUUAACUUUGGGUUCAGUUUAGGGACGUUGGACUGUAGCUUACAAGUGUGCUUGA -----------------..-.........((-----------------((((...((((......((((((((((((((.....)))))))).)))))).))))..)))))) ( -16.20) >consensus AUUUAAU_CA_U__GAAAACAAAUAUAUUCC_________________AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA ...................(((((((((....................((((((...((((((....(((((......)))))))))))...))))))....))))))))). (-11.81 = -12.77 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006