Locus 2907

Sequence ID 2L_DroMel_CAF1
Location 8,356,802 – 8,356,922
Length 120
Max. P 0.784718
window4613

overview

Window 3

Location 8,356,802 – 8,356,922
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -28.36
Consensus MFE -25.50
Energy contribution -25.46
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.90
SVM decision value 0.57
SVM RNA-class probability 0.784718
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8356802 120 + 22407834
UUUUUCCCUGCUCUGGCCAUGACUUUGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUCAAUGUCCUCGUACUCAACCACUCGCUCCACAGCUGUCAUCGUAUUCUCCA
...............((.(((((...(((((......(((((..(((((.......)))))..)))))...(((....)))......))))).(((....))).))))).))........ ( -26.80)
>DroSec_CAF1 24759 120 + 1
UUUUUCCCUGCUCUGGCCAGGACUUUGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUCAAUGUCCUCGUACUCAACCACUCGCUCCACAGCUGUCAUCGUAUUCUCCA
........(((..((((.(((((.((((.((((.......))))(((((.......))))).......)))).)))))...............(((....))).))))..)))....... ( -27.60)
>DroSim_CAF1 22377 120 + 1
UUUUUCCCUGCUCUGGCCAGGACUUUGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUCAAUGUCCUCGUACUCAACCACUCGCUCCACAGCUGUCAUCGUAUUCUCCA
........(((..((((.(((((.((((.((((.......))))(((((.......))))).......)))).)))))...............(((....))).))))..)))....... ( -27.60)
>DroEre_CAF1 24104 120 + 1
UUUUUCCCUGCUCGGGCCAGGACUUAGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUUAAUGUCCUCGUACUCAACCACUCGCUCCACAGCAGUCAUUGUAUUCUCCA
.......(((((.((((..(((.......((((.......))))(((((.......))))).)))((((..(((....)))....))))....))))...)))))............... ( -29.50)
>DroYak_CAF1 24529 120 + 1
UUUUUCCCUGCUCUGGCCAGGACUUUGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUUAAUAUCCUCGUAUUCCACCACUCGCUCGACUGCAGUCAUUGUAUUCUCCA
.......((((((.(((.((.....((((((......(((((..(((((.......)))))..)))))..(((((....))))))))))))).))).))..))))............... ( -30.30)
>consensus
UUUUUCCCUGCUCUGGCCAGGACUUUGGUGGCUUCUUAUCGGCCGGAGCUUCCAACGCUCCUUCCGGUUCAAUGUCCUCGUACUCAACCACUCGCUCCACAGCUGUCAUCGUAUUCUCCA
......(((((....).)))).....((((((.....(((((..(((((.......)))))..))))).........................((......)).)))))).......... (-25.50 = -25.46 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:12 2006