Locus 2906

Sequence ID 2L_DroMel_CAF1
Location 8,356,242 – 8,356,362
Length 120
Max. P 0.684032
window4612

overview

Window 2

Location 8,356,242 – 8,356,362
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.92
Mean single sequence MFE -41.64
Consensus MFE -34.12
Energy contribution -34.60
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.46
Structure conservation index 0.82
SVM decision value 0.31
SVM RNA-class probability 0.684032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8356242 120 + 22407834
CUCCUUGAACUUGUUUCGUAUGGUGGUUUGGAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUAGCCUCGUCCAUUACCAGGAUACGAUUUUCACGCAGUAUAGCCCGUGCCAAGCA
...((((........((((((..((((.((((((((((...(.((((((....)))....))).)..))))))))))..))))..))))))....((((..(.....).)))).)))).. ( -38.10)
>DroSec_CAF1 24199 120 + 1
CUCCUUGAACUUAUUGCGUAUGGUGGUUUGGAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACCAAGAUCCGAUUCUCACGCAGUAUAGCCCGCGCCAAGCA
...((((....((((((((.((((((..(((((((((((((..((((((....)))....))).)))))))))))))))))))(((......))).))))))))..((....)))))).. ( -46.50)
>DroSim_CAF1 21817 120 + 1
CUCCUUGAACUUAUUGCGUAUGGUGGUUUGGAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACCAAGAUCCGAUUCUCACGCAGUAUAGCCCGCGCCAAGCA
...((((....((((((((.((((((..(((((((((((((..((((((....)))....))).)))))))))))))))))))(((......))).))))))))..((....)))))).. ( -46.50)
>DroEre_CAF1 23544 120 + 1
CUCCUUGAACUUGUUGCGAAUGGUGGUUUGGAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUUGCUUCGUCCAUUACCAGAAUGCGAUUCUCACGCAAUAUAGCCCUUGCCAAGCA
.........((((..((((..((((((.((((((((((...(.((((((....)))....))).)..))))))))))..)))....((((.......)))).....))).)))))))).. ( -34.20)
>DroYak_CAF1 23969 120 + 1
CUCCUUGAACUUGUUGCGAAUGGUGGUUUGAAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUGACCAGAAUGCGAUUCUCACGGAGUAUGGCCCGUGCCAAGCA
((((.(((....((((((..((((.(..((.((((((((((..((((((....)))....))).)))))))))).))).))))...))))))..))).))))..((((....)))).... ( -42.90)
>consensus
CUCCUUGAACUUGUUGCGUAUGGUGGUUUGGAUGAGGCCAUCUGUCUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACCAGGAUCCGAUUCUCACGCAGUAUAGCCCGUGCCAAGCA
...((((....(((((((..((((((..(((((((((((((..((((((....)))....))).)))))))))))))))))))......(.....).)))))))..((....)))))).. (-34.12 = -34.60 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:11 2006