Locus 2904

Sequence ID 2L_DroMel_CAF1
Location 8,353,714 – 8,353,814
Length 100
Max. P 0.548732
window4610

overview

Window 0

Location 8,353,714 – 8,353,814
Length 100
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -17.40
Consensus MFE -9.71
Energy contribution -9.93
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.98
Structure conservation index 0.56
SVM decision value 0.03
SVM RNA-class probability 0.548732
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8353714 100 + 22407834
ACCUCCGAUUCUACAACAGAUUCGUCGACUGCUUC-CUCCACCACAAUUGGAGAUUCUAGCAG-CAGCUCUUUGGGUUCUUCCACAUCAGAUUCAUCAACCU
......((.(((...........((.(.(((((..-(((((.......))))).....)))))-).))....((((....))))....))).))........ ( -18.90)
>DroSec_CAF1 21815 90 + 1
ACCUCCGAU------------UCAUCGACUGCUUCCCUCCACUACGAAUGGAGAUUCUAGCACCCAGCUCUUUGGAAUCUUCCACUUCAGAUUCCUCAACCU
.....(((.------------...)))..((((...(((((.......))))).....))))...........(((((((........)))))))....... ( -17.30)
>DroEre_CAF1 21107 100 + 1
ACCUCCGAUUCUACAACAGAUUCUUCGACAGCCUC-CUCCAGCACAAAUGGAGAUUCUAGCAC-GAGCUCAUUGGCUUCUUCCACCACAGAUAUUUCAACAU
......((.(((.....))).))...((.((((..-(((((.......))))).....(((..-..)))....))))))....................... ( -16.00)
>consensus
ACCUCCGAUUCUACAACAGAUUCAUCGACUGCUUC_CUCCACCACAAAUGGAGAUUCUAGCAC_CAGCUCUUUGGAUUCUUCCACAUCAGAUUCAUCAACCU
...(((((............................(((((.......))))).....(((.....)))..))))).......................... ( -9.71 =  -9.93 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006