| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,352,955 – 8,353,050 |
| Length | 95 |
| Max. P | 0.979147 |
| Location | 8,352,955 – 8,353,050 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.11 |
| Mean single sequence MFE | -19.71 |
| Consensus MFE | -6.84 |
| Energy contribution | -7.08 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.35 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8352955 95 + 22407834 AGUUCAAAGAUAAUAAC--AACACCUGUGUAUAUUGACCAAUUUUAAUCAGUUGGUAACACAAGG----------------AUAAACAAUGGAGGACAUUGUACAUAUAUAUU----- .................--....(((((((......(((((((......))))))).)))).)))----------------....((((((.....))))))...........----- ( -17.70) >DroSec_CAF1 20978 88 + 1 AGU---AAGAUAACAAC--AUCACCUG------UUGACCAAUUUUAAUGAGUUGGUAACACAAGGAA-------UAUGUGUAUAAACAAUUC---UCGUUGUACAUA----UA----- ...---..(((......--))).((((------(..((((((((....))))))))...)).)))..-------(((((((((((.(.....---..))))))))))----))----- ( -19.70) >DroSim_CAF1 18811 103 + 1 AGUUCAAAGAUAACAACACAUCACCUGUGUAUAUUGACCAAUUUUUAUGAGUUGGUAACACAAGGAA-------UAUGUGUAUAAACAAUUC---UCGUUGUACAUAUAUAUA----- ........(((........))).(((((((......((((((((....)))))))).)))).))).(-------(((((((((((.(.....---..)))))))))))))...----- ( -23.20) >DroEre_CAF1 20443 113 + 1 AGUUCAAAGAUAACAAC--AUUACGUGUGUACAUUGACCAAUUUCAAUCGGUUGGUAACACAAGGAUACUUGUAUACUUGUAUGAACAAUAA---AUGUUGUACAUACAUACAUAUAU .................--.....(((((((.....(((((((......)))))))...(((((....))))).....((((((.(((((..---..))))).))))))))))))).. ( -25.00) >DroYak_CAF1 21243 85 + 1 AGUUCAAAGAUAAAAAC--AUCACG----UACAUUGACCAAUUUUAAUCGGUUGAUAACACAAGGAUAA---------UGUAUGAACAAUAU---AUGUAGUA--------------- .((((...(((......--)))..(----(((((((.((.......(((....))).......)).)))---------))))))))).....---........--------------- ( -12.94) >consensus AGUUCAAAGAUAACAAC__AUCACCUGUGUACAUUGACCAAUUUUAAUCAGUUGGUAACACAAGGAA_______UA__UGUAUAAACAAUAC___ACGUUGUACAUA_AUAUA_____ ....................................(((((((......))))))).............................((((((.....))))))................ ( -6.84 = -7.08 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:08 2006