Locus 2902

Sequence ID 2L_DroMel_CAF1
Location 8,343,911 – 8,344,005
Length 94
Max. P 0.978211
window4608

overview

Window 8

Location 8,343,911 – 8,344,005
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 92.11
Mean single sequence MFE -24.57
Consensus MFE -21.58
Energy contribution -21.58
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -2.47
Structure conservation index 0.88
SVM decision value 1.81
SVM RNA-class probability 0.978211
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8343911 94 + 22407834
UCCCCCACCCAUGGCGAUAAGUUAUCUACGACUGAGUCAUGCGAAAAUAGCACACAGUGCAAACUGAAAUGCACUAGAUGUAAUGAUUUGUAUA
...((((....))).)(((((((((.((((.((..((..(((.......))).))((((((........)))))))).)))))))))))))... ( -18.20)
>DroSec_CAF1 11932 92 + 1
UC--CCACCCAUGGCGAUAAGUUAUCUACAACUGAGUCAUGGGAAAAUAGAACCAAGUGCAAACUGAAGUGCACUAGGUGUAAUGAUUUGUAUA
..--...((((((((....((((......))))..))))))))........(((.((((((........)))))).)))............... ( -27.60)
>DroSim_CAF1 11740 92 + 1
UC--CCACCCAUGGCGAUAAGUUAUCUACAACUGAGUCAUGGGAAAAUAGAACCAAGUGCAAACUGAAGUGCACUAGAUGUAAUGAUUUGUAUA
..--...((((((((....((((......))))..))))))))............((((((........))))))................... ( -23.20)
>DroEre_CAF1 11765 92 + 1
UC--CCACCCAUGGCGAUAAGUUAUCUACGACUGAGUCAUGGGCAAAAAGCACAAAGUGCAAACUGAAAUGCACUGGGAGUAAUGAUUUGUAUA
((--((.((((((((....((((......))))..))))))))............((((((........))))))))))............... ( -29.30)
>consensus
UC__CCACCCAUGGCGAUAAGUUAUCUACAACUGAGUCAUGGGAAAAUAGAACAAAGUGCAAACUGAAAUGCACUAGAUGUAAUGAUUUGUAUA
.......((((((((....((((......))))..))))))))............((((((........))))))................... (-21.58 = -21.58 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:07 2006