Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,341,011 – 8,341,116 |
Length | 105 |
Max. P | 0.595679 |
Location | 8,341,011 – 8,341,116 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.84 |
Mean single sequence MFE | -42.77 |
Consensus MFE | -21.50 |
Energy contribution | -22.33 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.26 |
Mean z-score | -1.91 |
Structure conservation index | 0.50 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8341011 105 + 22407834 UCACGGCCAGGAUGCGGAGGAGGAUGACGAAAUCUCCGCAGAGGAUGCGUUCUUCUGCGGCAUCUGUAAAUCGCAUCGCUGCAAUGGUGCGGCGGCCGUAACGCU ..((((((..(((((((....(((((.........((((((((((.....))))))))))))))).....)))))))((((((....))))))))))))...... ( -52.20) >DroPse_CAF1 9509 105 + 1 CUAUGGCCAGGAAUCGGCCGAUAAUGACGAGGAAUCGGAGGAGGAUACCUUCUUCUGUGACAUUUGCAGAUCGGAUCGGUGCAACGGGGCCGCGGCAGUGACGUU ....((((.(..((((((((((..((.((((....(((((((((....))))))))).....)))))).))))).)))))....)..))))(((.......))). ( -35.40) >DroSim_CAF1 8740 105 + 1 CCACGGCCAGGAUGCGGAGGAGGACGACGAAAUCUCCGCGGAGGAUGCGUUCUUCUGCGGCAUCUGCAAAUCGCAUCGGUGCAAUGGUGCGGCGGCCGUAACGCU ..((((((.((((((.((((((((((.((...((((....)))).))))))))))).).)))))).....((((((((......)))))))).))))))...... ( -48.20) >DroYak_CAF1 8938 105 + 1 GCACGGCCAGGAUGCGGAUGCAGACGAGGAGAUCUCCGCGGAGGAUGCGUUCUUCUGCGACAUCUGCAAAUCGCAUCGCUGCAAUGGUGCGGCGGCCGUAACGCU ((((((((..(((((((.((((((.(.(((....)))((((((((.....))))))))..).))))))..)))))))((((((....))))))))))))...)). ( -55.80) >DroMoj_CAF1 16437 96 + 1 CUAUGGCCAGGAUGCGGAUGAGAA---------GGCGCCGGAGGAGGAGUUCUUCUGUGACAUUUGCAAAACGGAUCGCUGCAACGGGGCGGCUGCAGUGACGCU ....(((.....((((((((((((---------(((.((......)).).))))))....)))))))).......((((((((.((...))..)))))))).))) ( -29.60) >DroPer_CAF1 9521 105 + 1 CUAUGGCCAGGAAUCGGCCGAUAAUGACGAGGAAUCGGAGGAGGAUACCUUCUUCUGUGACAUUUGCAGAUCGGAUCGGUGCAACGGGGCCGCGGCAGUGACGUU ....((((.(..((((((((((..((.((((....(((((((((....))))))))).....)))))).))))).)))))....)..))))(((.......))). ( -35.40) >consensus CCACGGCCAGGAUGCGGACGAGAAUGACGAGAUCUCCGCGGAGGAUGCGUUCUUCUGCGACAUCUGCAAAUCGCAUCGCUGCAACGGGGCGGCGGCAGUAACGCU ..((.(((..((((((..((((...........))))((((((((.....)))))))).............))))))(.(((......))).)))).))...... (-21.50 = -22.33 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006