Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 833,132 – 833,227 |
Length | 95 |
Max. P | 0.868146 |
Location | 833,132 – 833,227 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -10.20 |
Consensus MFE | -9.70 |
Energy contribution | -9.32 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -1.12 |
Structure conservation index | 0.95 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 833132 95 + 22407834 AAUUUAUGGUAAUUUA-AACAAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .(((((((((((((..-...)))))))...--.-..---.(((((..........-..........)))))........(((...)))..))))))....... ( -8.95) >DroVir_CAF1 25677 102 + 1 AAUUUAUAGUAAUUUCA-ACAAUUGCUAAAACCACAACAACUAGUACUAAAAACGAAAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .((((((.((((((((.-.....(((((.............))))).......(....)...........)))))))).(((...)))..))))))....... ( -12.12) >DroPse_CAF1 21187 96 + 1 AAUUUAUGGUAAUUUC-AACAAUUGCUAAA--C-CA--AACUAGUACUAAAGACG-ACGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .((((((.((((((((-......(((((..--.-..--...))))).........-...((......)).)))))))).(((...)))..))))))....... ( -10.60) >DroYak_CAF1 19626 95 + 1 AAUUUAUAGUAAUUUA-AACAAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .(((((((((((((..-...))))))))..--.-..---.(((((..........-..........)))))........(((...)))...)))))....... ( -9.25) >DroAna_CAF1 20033 94 + 1 AAUUUAUAGUAAUUUA-AACGAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGACAUGAAUAA-AAUA .(((((((((((((..-...))))))))..--.-..---.(((((..........-..........)))))........(((...)))...)))))..-.... ( -9.65) >DroPer_CAF1 20449 96 + 1 AAUUUAUGGUAAUUUC-AACAAUUGCUAAA--C-CA--AACUAGUACUAAAGACG-ACGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .((((((.((((((((-......(((((..--.-..--...))))).........-...((......)).)))))))).(((...)))..))))))....... ( -10.60) >consensus AAUUUAUAGUAAUUUA_AACAAUUGCUAAA__C_CA___ACUAGUACUAAAGACG_AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA .(((((((((((((......))))))))............(((((.....................)))))........(((...)))...)))))....... ( -9.70 = -9.32 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:09 2006