Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 116,209 – 116,320 |
Length | 111 |
Max. P | 0.522358 |
Location | 116,209 – 116,320 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -15.48 |
Energy contribution | -17.17 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.22 |
Mean z-score | -1.91 |
Structure conservation index | 0.60 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 116209 111 + 22407834 AAUAGACAACUGUGC-GCCAAUCCACAGCGACGGCAGUUGUUCAAAUAAUUUCCAUAAUUAACUUUGUCGGUUUUUAUUGUGACGGCUCAU----AUCACAAUUGAUAGAGCUACC ....(((((((((.(-((.........)))...)))))))))...........((((((.((((.....))))...))))))..(((((.(----((((....))))))))))... ( -28.60) >DroSim_CAF1 11227 112 + 1 AAUAGACAACUGUGCCACCAAUCCACAGCGGCGGCAAUUGUUCAAAUAAUUUCCAUAAUUAACUUUGUCGGUUUUUAUUGUGACGCCACAU----AUCACAAUUUAUAGAACUACC ....(((((..(((((.(.........).)))((.((((((....)))))).)).......)).)))))((((((.(((((((........----.)))))))....))))))... ( -21.90) >DroEre_CAF1 11286 116 + 1 AAUAGACAACUGUGCCACUAAUCCCCAGCGGCGACAGUUGUUUAAAUAAUUACCGUAAUAAACUUUGGCGGCUUAUAUUGGGACGUCACAUAUGUAUCACAAUUGAUAGAGCCACC ..((((((((((((((.((.......)).))).)))))))))))......................((.(((((..((((((((((.....)))).)).)))).....))))).)) ( -30.90) >DroYak_CAF1 10427 112 + 1 AAUAGACAACAGUGGCGACCAUACCCAGUGGCGACAGUUGUUCAAACAAUUUCCAUAAUUAACUUUGGCGGUUUUUAUUGUUACGCCACAU----AUCACAAUUGAUAAAGCUUCC ...........((((((..........((((....((((((....)))))).)))).........(((((((....))))))))))))).(----((((....)))))........ ( -22.30) >consensus AAUAGACAACUGUGCCACCAAUCCACAGCGGCGACAGUUGUUCAAAUAAUUUCCAUAAUUAACUUUGGCGGUUUUUAUUGUGACGCCACAU____AUCACAAUUGAUAGAGCUACC ....((((((((((((((.........))))).)))))))))...........................((((((.(((((((.............)))))))....))))))... (-15.48 = -17.17 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:41 2006