Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,328,958 – 8,329,053 |
Length | 95 |
Max. P | 0.954861 |
Location | 8,328,958 – 8,329,053 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -13.98 |
Energy contribution | -15.21 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.51 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8328958 95 + 22407834 CCGA--------AGCCAAUCUGCUCGGCUCG---GCUCUCAGU--UCGCAAUGAGCUGGCUUUUUGAAAAAUCAACGUUUUUCGAAAAGUCAAAUACAAGUUUUCAGA ((((--------.(((.........))))))---).....(((--((.....)))))(((((((((((((((....)))))))))))))))................. ( -27.30) >DroSec_CAF1 7804 90 + 1 CCGA--------AGCCACUCUGC-----UCG---GCUCUCAGU--UCGCACUGAGAUGGCUUUUUGAAAAAUCAACGUUUUUCGAAAAGUCAAAUACGAGUUUUCAGA ..((--------((.......((-----(((---..(((((((--....)))))))((((((((((((((((....))))))))))))))))....)))))))))... ( -31.01) >DroSim_CAF1 8409 90 + 1 CCGA--------AGCCACUCCGC-----UCG---GCUCUCAGU--UCGCACUGAGCUGGCUUUUUGAAAAAUCAACGUUUUUCGAAAAGUCAAAUACGAGUUUUCAGA ..((--------((.......((-----(((---...((((((--....)))))).((((((((((((((((....))))))))))))))))....)))))))))... ( -28.71) >DroEre_CAF1 8396 88 + 1 UCGG--------AGUGGCUCUGC-----UCG----CUCUCCGU--UCGCGCUGAGCUGGCUUUUUGAA-AAUCAACGUUUUUCGAAAAGUCAAAUACGAGUUUUCAGA ((((--------(((......))-----))(----(((..((.--...))..))))((((((((((((-((.......))))))))))))))....)))......... ( -28.30) >DroYak_CAF1 8573 102 + 1 UCGCAAAGUCACAGUCACUCUGC-----UCGGCGGCUCUCAGU-UUCGCAGCGAGCUGGCUUUUUGAAAAAUCAUCAUUUUUCGAAAAGUCAAAUACGAGUUUUCAGA ................((((.((-----(((((((........-.))))..)))))((((((((((((((((....)))))))))))))))).....))))....... ( -28.90) >DroAna_CAF1 8391 86 + 1 UCGG--------GGAAGAGCUCU-----UCG---GCUGCUUGCCUGCCGAGCGUGCUGG---UUUGAAAAAUCAACGUUUUUCGAAAAAUUCAAU---AGUUUUCAGA ..(.--------.((..(((.((-----(((---((.........)))))).).)))..---((((((((((....)))))))))).........---..))..)... ( -21.10) >consensus CCGA________AGCCACUCUGC_____UCG___GCUCUCAGU__UCGCACUGAGCUGGCUUUUUGAAAAAUCAACGUUUUUCGAAAAGUCAAAUACGAGUUUUCAGA ..................................((((..............))))((((((((((((((((....))))))))))))))))................ (-13.98 = -15.21 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:03 2006