Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,324,565 – 8,324,661 |
Length | 96 |
Max. P | 0.826284 |
Location | 8,324,565 – 8,324,661 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -16.01 |
Energy contribution | -17.07 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.64 |
Structure conservation index | 0.60 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8324565 96 - 22407834 GCA--AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG---------AAAAAAAGGAAAAUUGAGAAGGAU-GAAGAGGGGAAG ...--..((((((((....((((.(((((.(((.....))))))))((((((((......))---------))))))...........))))...-)))))))).... ( -29.40) >DroSec_CAF1 4023 97 - 1 GCA--AACUUUUUUCUCUACUUCAGUUGCUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG-G-------AAAAAACGGAAAUAUGAGAAGGAU-GUGGAGGGGGAG ...--....(((..((((((((((((((.((((.....)))))))))((((((((.....))-)-------)))))...............))).-))))))..))). ( -31.80) >DroSim_CAF1 4053 98 - 1 GCA--AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGGGG-------AAAAAACGGAAAUAUGAGAAGGAU-GUGGAGGGGGAG ...--....(((..(((((((((((((((.(((.....)))))))))((((((((......)))-------)))))...............))).-))))))..))). ( -31.60) >DroEre_CAF1 4024 91 - 1 GGA--AACUUUUUUCUCUACUUCAUUGGUUGGCUCUCUGCCGCAGCUUUUUUCCUGAGCUGG-G-------AAG---AGGAAAAAUGAGAAGGAU-GAGUAGC---AG (..--..)......(((..((((..(.(((...(((((.((.((((((.......)))))))-)-------.))---)))...))).)))))...-)))....---.. ( -23.90) >DroYak_CAF1 4145 80 - 1 GGA--AACUUUUUCCUCUACUUCAUUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGC-G-------AAA---AUGAAAAAUGGGGCGG--------------- (..--..).....((((...(((((((..((((.....))))((((((.......)))))).-.-------.))---)))))....))))...--------------- ( -22.10) >DroAna_CAF1 4254 95 - 1 GUAACAAUUUUUUUCUCUACUUCAUU---UGGCUCUCUGCCACAGCUUUUU--CUAAGGGUG-UACCACAUAAAAAUAGGAAAA-UA----GGAUUGGGGAAGGGG-- .........((((((((((.(((...---((((.....))))....(((((--(((...(((-.....))).....))))))))-..----))).)))))))))).-- ( -21.20) >consensus GCA__AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG_G_______AAAAAAAGGAAAAAUGAGAAGGAU_GAGGAGGGGGAG .........((((((((...(((......((((.....))))((((((.......))))))..................)))....)))))))).............. (-16.01 = -17.07 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006