Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,320,487 – 8,320,584 |
Length | 97 |
Max. P | 0.692781 |
Location | 8,320,487 – 8,320,584 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 76.21 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -10.23 |
Energy contribution | -10.98 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.13 |
Mean z-score | -2.29 |
Structure conservation index | 0.38 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8320487 97 - 22407834 UAAACAAUUGGAUUGCUUGCCCAGUCAGAAGGGUUUAGCCGU--UCGGCACUUACCUCCUCCUGGUUGUAGGUGCCCUCUUGUGCUUUCAGCAUCAAAC .........((((.(((.((((........))))..))).))--))(((((((((..((....))..)))))))))...((((((.....))).))).. ( -33.80) >DroSec_CAF1 81 84 - 1 UAAACAAUUGGAUUGUUUGCACAGUCAGAAGG---------------GCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAGC ..........((((((....))))))...(((---------------((((((((.((.....))..)))))))))))(((((((.....)).))))). ( -26.90) >DroSim_CAF1 80 84 - 1 UAAACAAUUGGAUUGCUUGCACAGUCAGAAGG---------------GCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAGC ..............(((((.((((((((.(((---------------(........)))).)))))))).((.((((....))))..)).....))))) ( -26.00) >DroEre_CAF1 80 97 - 1 UAAACAAUUAGAUGGUUUGCCCAGUCAAAAGGGCUUAGCCAU--CUCGCACUCACCUUCUCCUGGUUGUAGGCGCCCUCCUGGGCUUUCAGCAUCAAAC .........((((((((.((((........))))..))))))--)).((.((((((.......)).)).))))((((....)))).............. ( -31.20) >DroYak_CAF1 80 97 - 1 UAAACAAUUAGAUUGUUGGCCCAGUCAGAAGGGCUAAGCCAU--CCGGCACUCACCUCCUCCUGGUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAAC ..........(((.((((((((........)))).(((((..--..(((((..((..((....))..))..)))))......))))).))))))).... ( -33.30) >DroAna_CAF1 80 88 - 1 UAAAUAUUGUGAAGG-----CCACUCAUG------CAGCAGUCACCGGCACUUACUUCCUGUUCAUUAUAGCUUCCCUCUUGUGCUUUUAGCAUCAAAC ........((((..(-----(..(....)------..))..)))).(((((.........(((......))).........)))))............. ( -12.17) >consensus UAAACAAUUGGAUUGUUUGCCCAGUCAGAAGG____AGCC_U__CCGGCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAAC ..........(((((......))))).....................((...........((((....)))).((((....)))).....))....... (-10.23 = -10.98 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006