Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,317,436 – 8,317,533 |
Length | 97 |
Max. P | 0.759237 |
Location | 8,317,436 – 8,317,533 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -12.46 |
Energy contribution | -12.68 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.10 |
Structure conservation index | 0.56 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8317436 97 - 22407834 CCAAUCCAAGGUAUCAGUAUGAGU-UGGCCAUUUAAUGAACUAAUG--UACUAAUCACACUGGUCUCAUUCGGGCACUAAUCUCAUAUAUA-U-AACCU-AUU---- ........((((....(((((((.-.((((....(((((((((.((--(.......))).)))).)))))..))).)....)))))))...-.-.))))-...---- ( -22.10) >DroVir_CAF1 609 90 - 1 CCAUGCCAAGGUAUUAGUAUGAGUUUUGCCAUUAUAUGGACUAAUG--UACUAAUC--ACUGGUCUCAU-CGGGCACUAAUCUCAUA--UA-U---------CAAUA ..((((....))))..(((((((...((((.....((((((((.((--.......)--).))))).)))-..)))).....))))))--).-.---------..... ( -21.30) >DroGri_CAF1 277 96 - 1 CAAUUGCCAGGUAUUAGUAAGAGU-UUGCCGUUGUAUGGACUAAUGAACACUAAUC--ACUGGUCUCAU-CGGGCACUAAUCUCAUA--UA-CUAAUCUCACU---- .........(..(((((((.(((.-.((((..((.((((((((.(((.......))--).))))).)))-)))))).....)))...--))-)))))..)...---- ( -21.20) >DroEre_CAF1 229 93 - 1 CCAAUACAAGGUAUCAGUAUGAGU-GGGCCAUUUAAUGGACUAAUG--UACUAAUC--ACUGGUCUCAUUCGGGCACUAAUCUCAUA--UA-C-AACAU-AUU---- ................((((((((-(((((....(((((((((.((--.......)--).))))).))))..))).)))..))))))--).-.-.....-...---- ( -21.60) >DroYak_CAF1 229 94 - 1 CCAUUCCAAGGUAUCAGUAUGAGU-GGGCCAUUUAAUGGACUAAUG--UACUAAUC--ACUGGUCUCAUUUGGGCACUAAUCUCAUA--UAAU-AACAC-AUU---- ................((((((((-(((((....(((((((((.((--.......)--).))))).))))..))).)))..))))))--)...-.....-...---- ( -22.30) >DroAna_CAF1 260 92 - 1 CAACUGCAAGGUAUCAGUAUGAGU-GGGCCGGUGAAUGGACUAAUG--UACUAAUC--ACUGGUCGCAUCUGGGCAUUAAUCUCGUA--UA-U-UAACU--CC---- ................(((((((.-.(((((((((.(((((....)--).))).))--)))))))((......))......))))))--).-.-.....--..---- ( -25.80) >consensus CCAUUCCAAGGUAUCAGUAUGAGU_GGGCCAUUUAAUGGACUAAUG__UACUAAUC__ACUGGUCUCAUUCGGGCACUAAUCUCAUA__UA_U_AACCU_AUU____ .................((((((....(((.....((((((((.................))))).)))...)))......)))))).................... (-12.46 = -12.68 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:55 2006