Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,312,996 – 8,313,093 |
Length | 97 |
Max. P | 0.585631 |
Location | 8,312,996 – 8,313,093 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.16 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -19.99 |
Energy contribution | -19.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.21 |
Mean z-score | -1.77 |
Structure conservation index | 0.61 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8312996 97 + 22407834 ACGCAGAUCCUAAU---CAAGUAUACUAUUAUGCCCUGGGUCUAUUCGGCAGCACAUUGCUAUCGGCUGUGUGUGCCACCCACUUCGAUUGGCGCAUGGC .(((.((((.....---...(((((....)))))..(((((......((((.(((((.((.....)).))))))))))))))....)))).)))...... ( -28.00) >DroSim_CAF1 7219 97 + 1 ACACAGAUCCCAAU---CAAGUUUAUUAUUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACACACUUCGACUGGCGCAUGGC ((((((..(((((.---...((.((....)).)).))))).....((((((((.....))))))))))))))((((((...........))))))..... ( -31.40) >DroEre_CAF1 7346 97 + 1 ACGCAGACUCCAAU---GAAGUAUAUUAUUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUUUGUGUGCCACCCACUUCGACUGGCGCAUGGC ..((((((.((((.---...(((((....))))).))))))))...(((((((.....))))))))).(..(((((((..(.....)..)))))))..). ( -35.90) >DroYak_CAF1 7259 97 + 1 ACGCAGACCCCAAU---CAAGUAUAUUACUAUGCCUUGGGCCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACCCACUUCGACUGGCGCAUGGC ((((((..(((((.---...(((((....))))).))))).....((((((((.....))))))))))))))((((((..(.....)..))))))..... ( -34.80) >DroMoj_CAF1 18002 100 + 1 GAUCAGAGGCGGAUCAGAAAGCCUAUUACUAUGCCUUGGGCCUGUUCGGGAGCACUUUGUUGUCGGCGCUGUGCGGCUGUCACUUUGAUUGGCGCAUGGC ((((.......)))).....(((.((.((..(((((((((....)))))).)))....)).)).)))((((((((.(.(((.....))).).)))))))) ( -32.20) >DroAna_CAF1 7527 97 + 1 ACCAGGAUCCGUAU---CUGGUGUAUUACUAUGCCCUGGGUCUCUUUGGCAGUACACUGCUCUCCGCCCUGUGCGCCACUCACUUUGAUUGGCGCAUGGC ((((((.......)---)))))..........(((..((((......(((((....)))))....)))).((((((((.((.....)).))))))))))) ( -35.00) >consensus ACGCAGAUCCCAAU___CAAGUAUAUUACUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACCCACUUCGACUGGCGCAUGGC ................................(((.((.(((.....(((.(((((..((.....))..))))))))...(.....)...))).)).))) (-19.99 = -19.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:54 2006