Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,309,109 – 8,309,217 |
Length | 108 |
Max. P | 0.866663 |
Location | 8,309,109 – 8,309,217 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.94 |
Mean single sequence MFE | -40.42 |
Consensus MFE | -32.88 |
Energy contribution | -31.88 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.38 |
Mean z-score | -1.50 |
Structure conservation index | 0.81 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8309109 108 + 22407834 GCCGCUAGAGGAAUAUGCCAGGGCAGCACCUUCUGUAGCCACUGUAGGUGGGGCACCGCGGGUUUUCUGGAACUGGGAUGAUAUACUUAGUAAGUUCC--CAGUCAAGCA ((..((((((((...(((((((((.(((.....))).))).)))..((((...)))))))..)))))))).(((((((...(((.....)))...)))--))))...)). ( -36.00) >DroVir_CAF1 3327 108 + 1 GCCGCUGGAGGAAUAUGCUCGAGCAGCGCCCGCUGUGGCCACGGUGGGCGGGGCGCCGCGCGUCUUCUGGAACUGGGACGACAUACUCAGUAAGCUGA--UCAGCAAGAG ...(((((.((((.((((.((.((..((((((((((....))))))))))..))..)).)))).))))...((((((........)))))).......--)))))..... ( -46.30) >DroPse_CAF1 3237 110 + 1 GCCGCUAGAAGAAUAUGCACGGGCAGCGCCUGCUGUGGCCACAGUCGGUGGUGCACCGCGUGUCUUCUGGAAUUGGGAUGAAAUACUCAGUAAGUGAAAAGAGUGUAGCA .((.((((((((.(((((..(((((.((((.(((((....))))).)))).))).)))))))))))))))....))..((..((((((............))))))..)) ( -42.60) >DroGri_CAF1 3985 105 + 1 ACCGCUGGAGGAAUAUGCACGAGCUGCGCCCGCUGUGGCAACGGUGGGUGGGGCACCGCGCGUCUUCUGGAACUGGGAUGAUAUACUCAGUGAGUCCA--UUCCCA---U ....(..(((((...(((.((.(((.((((((((((....)))))))))).)))..)).))))))))..)...(((((.(((.(((...))).)))..--.)))))---. ( -44.80) >DroYak_CAF1 3461 108 + 1 GCCGCUGGAGGAAUAUGCCAGAGCAGCACCUGCAGUUGCCACUGUAGGUGGAGCACCUCGGGUCUUUUGGAACUGGGAUGAUAUACUUAGUAAGUUUC--CAAUCAAACA ...(((.((((....(((....))).((((((((((....)))))))))).....)))).)))...(((((((((((........)))))).....))--)))....... ( -34.80) >DroPer_CAF1 3237 110 + 1 GCCGCUAGAAGAAUAUGCACGGGCAGCGCCUGCUGUGGCCACUGUCGGUGGUGCACCGCGUGUCUUCUGGAAUUGGGAUGAAAUACUCAGUAAGUGAAAAGAGUGUAGCA .((.((((((((.(((((..(((((.((((.((.((....)).)).)))).))).)))))))))))))))....))..((..((((((............))))))..)) ( -38.00) >consensus GCCGCUAGAGGAAUAUGCACGAGCAGCGCCUGCUGUGGCCACUGUAGGUGGGGCACCGCGCGUCUUCUGGAACUGGGAUGAUAUACUCAGUAAGUUAA__CAGUCAAGCA ....((((((((...(((....((..((((((((((....))))))))))..))...)))..)))))))).((((((........))))))................... (-32.88 = -31.88 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:52 2006