Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 820,608 – 820,728 |
Length | 120 |
Max. P | 0.725677 |
Location | 820,608 – 820,728 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -45.13 |
Consensus MFE | -30.85 |
Energy contribution | -30.92 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.41 |
Mean z-score | -2.20 |
Structure conservation index | 0.68 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 820608 120 - 22407834 AUAUUGUUGCGAUGCUCCAGGCUGCCCACAUACUGCUUGCACGAGUUGGCCUUGUGGCCCAGCUCGCCGCAAUAGUGGCACGUGGGCAGUUUCUUGUGCAGCUGAUCCUUACCCAGUUCC .....((((((.......(((((((((((.(((((.((((.((((((((((....)).))))))))..)))))))))....)))))))))))....)))))).................. ( -49.30) >DroGri_CAF1 6791 120 - 1 AUAUUAUUGCGAUGCUCCAUGCUGCCCACGUAUUGUUUGCACGAGUUCGCCUUGUGUCCCAAUUCGCCACAGUAAUGGCAGGUGGGCAGUUUCUUGUGCAACUGAUCCUUGCUGAGAUCA ......(((((.........((((((((((.((((...(((((((.....)))))))..)))).)((((......))))..)))))))))......)))))..(((((.....).)))). ( -40.16) >DroWil_CAF1 8615 120 - 1 AUGUUGUUACGGUUCUCCAGGCUGCCAGCAUAUUGCUUGCACGCAUUCGCCUUGUGCCCCAGUUCGCCGCAAUAGUGACAGGUGGGCAGCUUUUUGUGAAGUUGAUCUUUGCUUAGGUCA ......((((((....))((((((((.(((((..((.((....))...))..))))).......((((.((....))...))))))))))))...))))...((((((......)))))) ( -34.30) >DroMoj_CAF1 6598 120 - 1 AUGUUAUUGCGAUGCUCCAGGCUGCCCACAUACUGUUUGCACGAGUUCGCUUUGUGGCCGAGCUCGCCGCAGUAGUGGCACGUGGGUAGUUUUUUGUGCGUCUGAUCCUUGCUGAGAUCG ..........(((((.(.(((((((((((.............(((((((((....)).)))))))(((((....)))))..)))))))))))...).))))).(((((.....).)))). ( -47.80) >DroAna_CAF1 7013 120 - 1 AUGUUGUUGCGGUGCUCCAGACUGCCCACGUACUGCUUGCACGAGUUGGCCUUGUGCCCGAGCUCGCCGCAGUAGUGGCACGUGGGCAGCUUCUUGUGCAUCUGAUCUUUGCUGAUCUCG ..........(((((.(.(((((((((((((...(((((((((((.....)))))))..))))..(((((....)))))))))))))))..))).).))))).((((......))))... ( -54.10) >DroPer_CAF1 6885 120 - 1 AUGUUGUUGCGGUUCUCCAAGCUACCCGCGUAUUGCUUGCACGAAUUGGCCUUAUGGCCGAGCUCGCCGCAGUAGUGGCAUGUAGGUAGCUUCUUGUGUAGCUGAUCCUUGCUGAGGUCA .....(((((((....))((((((((..(((.(..(((((.(((.((((((....))))))..)))..)))..))..).)))..)))))))).....))))).((.((((...)))))). ( -45.10) >consensus AUGUUGUUGCGAUGCUCCAGGCUGCCCACAUACUGCUUGCACGAGUUCGCCUUGUGGCCCAGCUCGCCGCAGUAGUGGCACGUGGGCAGCUUCUUGUGCAGCUGAUCCUUGCUGAGAUCA ..........(.(((.(.(((((((((((.....(((..((((((.....))))))....)))..(((((....)))))..)))))))))))...).))).).((((........)))). (-30.85 = -30.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:09 2006