Locus 2889

Sequence ID 2L_DroMel_CAF1
Location 8,291,781 – 8,291,915
Length 134
Max. P 0.746598
window4589 window4590

overview

Window 9

Location 8,291,781 – 8,291,875
Length 94
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 78.79
Mean single sequence MFE -16.70
Consensus MFE -10.77
Energy contribution -11.28
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.605498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8291781 94 - 22407834
AAUAGCUUUGUGCCAUUUUGGCAAAGUAGGAAAGCUAUUAAAUGUACUUAUUAACUUACUUUCAACACAAAAAUCGAUUGCUAUCUUAGGCAA------U
(((((((((.((((.....)))).......))))))))).....................................((((((......)))))------) ( -16.90)
>DroSim_CAF1 72784 85 - 1
AAUAGCUUUGUGCCAUUUUGGCAAAGUAGGAAAGCUAUUAAAUGUACUUAUUAACUUA---------CAAAAAUCGAUUGCUAUCUUAGGCAA------C
(((((((((.((((.....)))).......)))))))))...................---------..........(((((......)))))------. ( -16.20)
>DroEre_CAF1 72396 93 - 1
AAUAGCUUUGUGCCAUUUUGGCAAAGUAGGAAAGCUAUUAAAAGUAG-UA-UAACUUACUAUUAACA-AAAAAUAA----CUUACUUACAAAAAAUCGAU
(((((((((.((((.....)))).......)))))))))...(((((-((-.....)))))))....-........----.................... ( -17.20)
>DroYak_CAF1 75153 92 - 1
AAUAGCUUUGUGCCAUUUUGGCAAACUAGGCACGCUAUUAAAUGUACUUA-CAACUUACUAUUAACA-AAAAAUUGGUUGCUAACUUACAUAA------U
((((((...(((((..............)))))))))))..(((((.(((-(((((...........-.......))))).)))..)))))..------. ( -16.51)
>consensus
AAUAGCUUUGUGCCAUUUUGGCAAAGUAGGAAAGCUAUUAAAUGUACUUA_UAACUUACUAUUAACA_AAAAAUCGAUUGCUAACUUACACAA______U
(((((((((.((((.....)))).......)))))))))............................................................. (-10.77 = -11.28 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 8,291,810 – 8,291,915
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.57
Mean single sequence MFE -21.82
Consensus MFE -18.26
Energy contribution -18.82
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.84
SVM decision value 0.46
SVM RNA-class probability 0.746598
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8291810 105 + 22407834
UUGAAAGUAAGUUAAUAAGUACAUUUAAUAGCUUUCCUACUUUGCCAAAAUGGCACAAAGCUAUUGAAAACGUAAGCUCCUUGUGUUAAUGAUUUAUGCCGAGUC
(((...((((((((.(((.((((((((((((((((.......((((.....)))).))))))))))))..(....).....))))))).))))))))..)))... ( -22.40)
>DroSim_CAF1 72811 98 + 1
-------UAAGUUAAUAAGUACAUUUAAUAGCUUUCCUACUUUGCCAAAAUGGCACAAAGCUAUUGAAAACGUAAGCUCCUUGUGUUAAUGAUUUAUGCCAAGUC
-------(((((((.(((.((((((((((((((((.......((((.....)))).))))))))))))..(....).....))))))).)))))))......... ( -20.00)
>DroEre_CAF1 72426 103 + 1
UUAAUAGUAAGUUA-UA-CUACUUUUAAUAGCUUUCCUACUUUGCCAAAAUGGCACAAAGCUAUUGAAAACGUAAGCUCCUUGUGUUAAUGAUUUAUGCCAAGUC
......((((((((-(.-.....((((((((((((.......((((.....)))).))))))))))))((((((((...)))))))).)))))))))........ ( -22.10)
>DroYak_CAF1 75181 104 + 1
UUAAUAGUAAGUUG-UAAGUACAUUUAAUAGCGUGCCUAGUUUGCCAAAAUGGCACAAAGCUAUUGAAAACGUAAGCUCCUUGUGUUAAUGAUUUAUGCCAAGUC
......((((((..-(.((((((((((((((((((((..((((....)))))))))...)))))))))..(....).....)))))).)..))))))........ ( -22.80)
>consensus
UUAAUAGUAAGUUA_UAAGUACAUUUAAUAGCUUUCCUACUUUGCCAAAAUGGCACAAAGCUAUUGAAAACGUAAGCUCCUUGUGUUAAUGAUUUAUGCCAAGUC
......((((((((.........((((((((((((.......((((.....)))).))))))))))))((((((((...))))))))..))))))))........ (-18.26 = -18.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:48 2006