| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,285,839 – 8,285,929 |
| Length | 90 |
| Max. P | 0.584508 |
| Location | 8,285,839 – 8,285,929 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.31 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8285839 90 + 22407834 UCAAGUGCCGUCAAGUGGAAUGCCAGGACGAU------GCCGAAAAAAAGGAGCGAAACGAGCUUAAAUGGCGCACAUUU-UUCGGCAUCCAGUUAA-- .........(((...(((....))).)))(((------(((((((((...((((.......))))...((.....)))))-))))))))).......-- ( -26.20) >DroPse_CAF1 81076 76 + 1 UCAAGUGCCAUCAAGUGGAAUGCCAGGACGAU------GGC--------------AUACAAAUUUAAGUGGCGCACAUUUUUUCGGCG-GCAGUUAA-- ....((((((((...(((....)))....)))------)))--------------))......((((.((.(((.(........))))-.)).))))-- ( -22.60) >DroEre_CAF1 66347 89 + 1 UCAAGUGCCGUCAAGUGGAAUGCCAGGACGAU------GCCGAAA-AAAGGAGCGAGACGAGUUUAAAUGGCUGACAUUG-UUCGGCAUUCAGUUAA-- .((..((....))..))(((((((.(((((((------(((....-...))(((.(............).)))..)))))-))))))))))......-- ( -23.30) >DroYak_CAF1 67897 89 + 1 UCAAGUGCCGUCAAGUGGAAUGCCAGGACGAU------GCCUAAA-AAAGGAGCGAGGCGAAUUUAAAUGGCGCACAUUU-UUCGGCAUCCAGUUAA-- ....((((((..(((((...(((((.((...(------((((...-.........)))))...))...)))))..)))))-..))))))........-- ( -24.80) >DroAna_CAF1 72030 90 + 1 --AAGUGCCGUCAAGUGGAAUGCCAGGACGACAAGGAGGCCGACG-AAA------AAAAAAAUUUAAAUGGCGAACAUUUUUUCGGCAGCCAGUUGAGA --...((.((((...(((....))).)))).)).((..(((((..-...------..........(((((.....)))))..)))))..))........ ( -20.43) >DroPer_CAF1 83653 76 + 1 UCAAGUGCCAUCAAGUGGAAUGCCAGGACGAU------GGC--------------AUACAAAUUUAAGUGGCGCACAUUUUUUCGGCG-GCAGUUAA-- ....((((((((...(((....)))....)))------)))--------------))......((((.((.(((.(........))))-.)).))))-- ( -22.60) >consensus UCAAGUGCCGUCAAGUGGAAUGCCAGGACGAU______GCCGAAA_AAA______AAACAAAUUUAAAUGGCGCACAUUU_UUCGGCAUCCAGUUAA__ .....(((((..(((((...(((((...........................................)))))..)))))...)))))........... (-13.25 = -13.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:45 2006