Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,273,119 – 8,273,210 |
Length | 91 |
Max. P | 0.810484 |
Location | 8,273,119 – 8,273,210 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -21.98 |
Energy contribution | -21.98 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.63 |
Structure conservation index | 0.83 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8273119 91 + 22407834 CGUGGGCAGAGGAGACCUAGGAGCAGUUCAUUGAGCUCCACUGUAACGCAUACACUCGCUUCGGUGUCUCUUCUUUAUACUAUUAUUUUUU--- .(((...(((((((((...(((((..........)))))((((.((.((........)))))))))))))))))...)))...........--- ( -26.30) >DroSec_CAF1 51089 94 + 1 CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGUUGUCUCUUCUUUAUACUAUUAUUUUUUGUU .(((...((((((((((((((((.(((....((.((...........)).)).))))))))))..)))))))))...))).............. ( -25.60) >DroSim_CAF1 51979 94 + 1 CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGGUGUCUCUUCUUUAUACGAUUAUUUUUUGUU ((((...((((((((((((((((.(((....((.((...........)).)).)))))))))))..))))))))...))))............. ( -28.20) >DroEre_CAF1 53499 86 + 1 CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCCUGGGUGUCUCUUCUUUUCAUUAUUUU-------- .(((((.((((((((((((((((.(((....((.((...........)).)).)))))))))))..)))))))).)))))......-------- ( -30.20) >DroYak_CAF1 54964 93 + 1 CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGCCUGCCUCUUCUUUUCAUCAUUUUUGU-UGUU .(((((.(((((((...((((((.(((((...))))).)........((........))..))))).))))))).))))).........-.... ( -22.50) >consensus CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGGUGUCUCUUCUUUAUACUAUUAUUUUUUGUU .(((...((((((((((((((((.(((....((.((...........)).)).))))))))))..)))))))))...))).............. (-21.98 = -21.98 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006