Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,265,691 – 8,265,781 |
Length | 90 |
Max. P | 0.613126 |
Location | 8,265,691 – 8,265,781 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -19.94 |
Consensus MFE | -13.88 |
Energy contribution | -14.77 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -1.36 |
Structure conservation index | 0.70 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8265691 90 - 22407834 ACAUCACAAAUGACAACAAAUGGAAAAAUAGUUACAGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA- ...(((((..(((.((((.........((((.......))--))......)))).))).((((((.(......).)))))).))))).....- ( -18.76) >DroSec_CAF1 43754 90 - 1 ACAUAACAAAUGACAACGAAUGGAAAAAUAGUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA- .((((.....((((................)))).....)--))).....((((((((.((((((.(......).))))))...))))))))- ( -19.59) >DroSim_CAF1 43793 87 - 1 ACAUAACAAAUGACAACGAAUGGAAAAAUAGUUACG-CCU--AUGGAAAAUGUUUUCA-GAUGGCGACGCCUUUGG-CAUCGUGUGAAAGCA- ...............((((...............((-((.--.(((((.....)))))-...))))..(((...))-).))))((....)).- ( -17.90) >DroEre_CAF1 45968 90 - 1 ACAUAACUCAUGACAGAACACGGAAAAUUAGUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGCGUGAAAGCA- .((((..((.((((................)))).))..)--))).....((((((((.((((((.(......).))))))...))))))))- ( -21.59) >DroYak_CAF1 47335 90 - 1 ACAUAACUAAUGAUAGAAAAUGGAAAAAUAUUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUAUGGCCAUCGUGUGAAAGCA- .((((.(((....))).(((((......)))))......)--))).....((((((((.((((((.(......).))))))...))))))))- ( -19.80) >DroPer_CAF1 53777 91 - 1 UUUUGUUUAAUUUAAGAAAACAACAAAAUAUUUGUUUUCUUCAUGGAAAACGCUUUCAAGAUGGCGUCGU--UUGCGAAAAGCGUGAAAGCCU ....((((..(..((((((((((........))))))))))...)..))))(((((((.....((.(((.--...)))...)).))))))).. ( -22.00) >consensus ACAUAACAAAUGACAAAAAAUGGAAAAAUAGUUACGGCCU__AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA_ .....................................((.....)).....(((((((.((((((.(......).))))))...))))))).. (-13.88 = -14.77 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:33 2006