Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 817,723 – 817,833 |
Length | 110 |
Max. P | 0.578087 |
Location | 817,723 – 817,833 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -36.99 |
Consensus MFE | -23.60 |
Energy contribution | -23.67 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.35 |
Mean z-score | -1.46 |
Structure conservation index | 0.64 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 817723 110 - 22407834 GCGGCAUUUCCGCAUCCCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAAUUGCCCGUCUGCAUGGUGUACAACCUGGUGAUGGCCAUCACCACGGACUUCCAGUCCA ((((.....))))......(..((((((......(((...((((..........))))...)))..(((.....)))(((((((....)))))))))))))..)...... ( -38.30) >DroSec_CAF1 4265 110 - 1 GCGUCAUUUACGCGUGUCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAGUUGCCCGUGUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA ((((.....))))(((.....(((((((.....))(((..((((....))........((((((...))))))..))..)))..))))).)))...((((.....)))). ( -36.50) >DroSim_CAF1 4267 110 - 1 GCGUCAUUUCCGCGUCUCAGUUGGUCCGAUUCUCGCACUCGGGCUUCUGCAAUUGCCCGUGUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA (((.......)))......(..((((((......((((.(((((..........))))).))))(((((.(((......)))...))))).....))))))..)...... ( -38.50) >DroEre_CAF1 4268 110 - 1 GUGGCAUUUCCCCCUCCCAGUUGGUCCGCUUCUCGCACUGGGGCUUUUGCAGAUGCCCGUUUGCAUGGCAUACAACCUGGUAAUGGCCAUCACAACGGACUUCCAGACCA (.(((((((......(((((((((........))).))))))((....))))))))))(((((.(((((.(((......)))...))))))).)))((....))...... ( -31.10) >DroYak_CAF1 4268 110 - 1 GCGGCAUUUCCGCAUCCCAGUUGGUCCACCUCUCGCGCUGGGACUUUUGCAGAUGCCCGUUGGCAUGGCAUACAACCUGGUGAUGGCCAUCACCACGGAUUUCCAGUCCA ((((.....)))).(((((((.((....))......)))))))....(((..(((((....))))).))).......(((((((....))))))).((((.....)))). ( -38.90) >DroAna_CAF1 4440 110 - 1 GAGGCGUCUCAUCAUUUAUUUUAGACGCCUCUUGGGACUGGGACUCCUGCCCGUUCCCAUUUCCGUGGUCUACGUCUUCGUGAUGGCCAUUUUGACCGACUUCCAGGCCA (((((((((.............))))))))).(((((.((((.(....))))).))))).....((((((((((....))))..))))))..((.((........)).)) ( -38.62) >consensus GCGGCAUUUCCGCAUCCCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAGUUGCCCGUUUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA ((((.....))))......(..((((((......(((...((((..........))))...)))(((((.(((......)))...))))).....))))))..)...... (-23.60 = -23.67 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:07 2006