Locus 288

Sequence ID 2L_DroMel_CAF1
Location 817,723 – 817,833
Length 110
Max. P 0.578087
window459

overview

Window 9

Location 817,723 – 817,833
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.06
Mean single sequence MFE -36.99
Consensus MFE -23.60
Energy contribution -23.67
Covariance contribution 0.06
Combinations/Pair 1.35
Mean z-score -1.46
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.578087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 817723 110 - 22407834
GCGGCAUUUCCGCAUCCCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAAUUGCCCGUCUGCAUGGUGUACAACCUGGUGAUGGCCAUCACCACGGACUUCCAGUCCA
((((.....))))......(..((((((......(((...((((..........))))...)))..(((.....)))(((((((....)))))))))))))..)...... ( -38.30)
>DroSec_CAF1 4265 110 - 1
GCGUCAUUUACGCGUGUCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAGUUGCCCGUGUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA
((((.....))))(((.....(((((((.....))(((..((((....))........((((((...))))))..))..)))..))))).)))...((((.....)))). ( -36.50)
>DroSim_CAF1 4267 110 - 1
GCGUCAUUUCCGCGUCUCAGUUGGUCCGAUUCUCGCACUCGGGCUUCUGCAAUUGCCCGUGUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA
(((.......)))......(..((((((......((((.(((((..........))))).))))(((((.(((......)))...))))).....))))))..)...... ( -38.50)
>DroEre_CAF1 4268 110 - 1
GUGGCAUUUCCCCCUCCCAGUUGGUCCGCUUCUCGCACUGGGGCUUUUGCAGAUGCCCGUUUGCAUGGCAUACAACCUGGUAAUGGCCAUCACAACGGACUUCCAGACCA
(.(((((((......(((((((((........))).))))))((....))))))))))(((((.(((((.(((......)))...))))))).)))((....))...... ( -31.10)
>DroYak_CAF1 4268 110 - 1
GCGGCAUUUCCGCAUCCCAGUUGGUCCACCUCUCGCGCUGGGACUUUUGCAGAUGCCCGUUGGCAUGGCAUACAACCUGGUGAUGGCCAUCACCACGGAUUUCCAGUCCA
((((.....)))).(((((((.((....))......)))))))....(((..(((((....))))).))).......(((((((....))))))).((((.....)))). ( -38.90)
>DroAna_CAF1 4440 110 - 1
GAGGCGUCUCAUCAUUUAUUUUAGACGCCUCUUGGGACUGGGACUCCUGCCCGUUCCCAUUUCCGUGGUCUACGUCUUCGUGAUGGCCAUUUUGACCGACUUCCAGGCCA
(((((((((.............))))))))).(((((.((((.(....))))).))))).....((((((((((....))))..))))))..((.((........)).)) ( -38.62)
>consensus
GCGGCAUUUCCGCAUCCCAGUUGGUCCGAUUCUCGCACUGGGGCUUCUGCAGUUGCCCGUUUGCAUGGCAUACAACCUGGUGAUGGCCAUCACAACGGACUUCCAGUCCA
((((.....))))......(..((((((......(((...((((..........))))...)))(((((.(((......)))...))))).....))))))..)...... (-23.60 = -23.67 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:07 2006