Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,262,271 – 8,262,384 |
Length | 113 |
Max. P | 0.832074 |
Location | 8,262,271 – 8,262,384 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -27.79 |
Consensus MFE | -19.00 |
Energy contribution | -19.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.31 |
Mean z-score | -1.69 |
Structure conservation index | 0.68 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8262271 113 - 22407834 CAAGCAGUCCCCAACUCUAUUGAACGGCAACGGAACUCUAUUGGAUGCCAAUAUGCCUGGCGGUAUACCCACUCCCGGAACACCAAAUUCCAAAGCCAAGGUAG-------CAAAAAAAA ...((....................((((.(.((......)).).))))....((((((((((....)).......((((.......))))...))).))))))-------)........ ( -24.80) >DroVir_CAF1 50518 108 - 1 CAAGCAGUCACCCACUUUACUUAACGGCAACGGCGCUUUGUUAGAUGCCAACAUGCCCGGCGGAAUACCAACGCCCGGCACGCCCAACUCCAAAGCCAAGGUGA---------GUU---U .......(((((..((((.......(((...((((((.....)).))))....((((.((((.........)))).)))).))).......))))....)))))---------...---. ( -31.84) >DroGri_CAF1 53939 108 - 1 CAAGCAGUCACCCACAUUACUUAACGGCAACGGCGUUUUAUUGGAUGCCAACAUGCCCGGCGGAAUACCAACGCCCGGCACGCCCAACUCCAAAGCCAAGGUAA---------GCU---A ..(((.((.....)).((((((...(((...(((((((....)))))))....((((.((((.........)))).))))..............))).))))))---------)))---. ( -32.50) >DroWil_CAF1 46864 108 - 1 CAAACAAUCUCCCACUUUACUCAACGGCAACGGAAAUCUAUUGGAUGCCAAUAUGCCUGGUGGAAUUCCCACACCUGGUACCCCCAAUUCCAAAGCCAAGGUAA---------AUU---A ...............((((((....(((...((((...((((((...))))))((((.((((.........)))).)))).......))))...)))..)))))---------)..---. ( -24.70) >DroMoj_CAF1 50083 108 - 1 UAAGCAGUCACCCACUUUACUUAACGGCAACGGAGCUUUAUUGGAUGCCAAUAUGCCUGGCGGAAUUCCAACGCCUGGCACGCCCAAUUCCAAAGCCAAGGUAA---------GCU---A ..((((((.....)))((((((..((....))(.((((((((((..((.....((((.((((.........)))).)))).)))))))...)))))).))))))---------)))---. ( -30.10) >DroAna_CAF1 48840 116 - 1 CAAGCAAUCCCCGACUUUAUUGAACGGCAACGGAAAUCUAUUGGAUGCCAAUAUGCCUGGCGGUAUACCCACCCCUGGAACUCCAAAUUCCAAAUCAAAGGUGAGAGUUAUUAAAA---- ............((((((.......((((.(.((......)).).)))).....((((((.(((......)))))(((((.......)))))......)))).)))))).......---- ( -22.80) >consensus CAAGCAGUCACCCACUUUACUUAACGGCAACGGAACUCUAUUGGAUGCCAAUAUGCCUGGCGGAAUACCAACGCCCGGCACGCCCAAUUCCAAAGCCAAGGUAA_________AAU___A ................(((((....(((...((((...((((((...))))))((((.((((.........)))).)))).......))))...)))..)))))................ (-19.00 = -19.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:32 2006