| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,262,144 – 8,262,249 |
| Length | 105 |
| Max. P | 0.913383 |
| Location | 8,262,144 – 8,262,249 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -22.24 |
| Energy contribution | -21.27 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8262144 105 - 22407834 AA----------UAGUUAUUAAUUUGUGUUUCUGCGACAGGACAACUCCCACUUUGUCAAGCUGGUGGUGGCUCUCUAUCCAUUCAAGGCCAUCGAAGGCGGCGAUUUAUCGCUG ..----------...........((((((....)).))))(((((........)))))..(((..((((((((..............))))))))..)))(((((....))))). ( -26.24) >DroVir_CAF1 49788 100 - 1 AACAAC----------UUUUGACUCAU-UUUC----GCAGGACAAUUCACACUUUGUCAAGCUUGUGGUGGCGCUUUAUCCAUUCAAAGCCAUUGAAGGCGGCGACUUAUCAUUG ......----------...........-..((----((..(((((........)))))..((((.(((((((................))))))).)))).)))).......... ( -22.19) >DroEre_CAF1 42379 105 - 1 AA----------UGUUUUCUAAUUUGAGCUUCUUGGACAGGACAAUUCCCACUUUGUCAAGCUUGUGGUGGCUCUCUAUCCAUUCAAGGCCAUCGAAGGCGGUGAUUUAUCGCUU ..----------.((((((......((((((....(((((((....))).....))))))))))..(((((((..............)))))))))))))(((((....))))). ( -25.94) >DroYak_CAF1 43683 105 - 1 AA----------UAGAUUUUAAUUUGUGUUUCUUCGGCAGGACAACUCCCACUUUGUCAAGCUGGUGGUGGCUCUCUAUCCAUUCAAGGCCAUCGAAGGCGGCGAUUUGUCGCUG .(----------(((((....))))))...((((((((..(((((........)))))..)))...(((((((..............))))))))))))((((((....)))))) ( -28.74) >DroMoj_CAF1 49752 114 - 1 AAAAAGUUUCUAUAUUUAUUCAUAUAU-UUUCCAUUCCAGGACAAUUCACACUUUGUCAAGCUCGUGGUGGCUCUCUAUCCAUUCAAAGCCAUCGAGGGCGGAGAUUUAUCUCUA ...((((((((................-............(((((........)))))..((((.((((((((..............)))))))).))))))))))))....... ( -26.84) >DroPer_CAF1 48145 100 - 1 AA----------CAUUU-GUAAUC--UCUUUCUU--UCAGGACAAUUCACAUUUUGUCAAAUUGGUGGUGGCCCUGUAUCCCUUCAAGGCCAUCGAAGGUGGAGAUUUAUCUCUA ..----------.....-..((((--(((..(((--((..(((((........)))))........(((((((.((........)).)))))))))))).)))))))........ ( -30.60) >consensus AA__________UAUUUUUUAAUUUGUGUUUCUU_GACAGGACAAUUCACACUUUGUCAAGCUGGUGGUGGCUCUCUAUCCAUUCAAGGCCAUCGAAGGCGGCGAUUUAUCGCUG ........................................(((((........)))))..(((..((((((((..............))))))))..)))(((((....))))). (-22.24 = -21.27 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:31 2006