| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,260,880 – 8,260,983 |
| Length | 103 |
| Max. P | 0.956737 |
| Location | 8,260,880 – 8,260,983 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.56 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -24.60 |
| Energy contribution | -24.63 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8260880 103 - 22407834 UCCCCAUCAAGUGGGCCCCGCCCGAAGUGCUCAACUACACGCGCUUCUCCUCUAAGAGCGAUGUGUGGGCAUACGGUGAGUACUUGUCCCGCGCAACGGAA----------G-C ...........(((((...)))))(((((((((.(((((((((((.((......)))))).)))))))........)))))))))...(((.....)))..----------.-. ( -33.90) >DroVir_CAF1 48272 102 - 1 UUCCCAUCAAAUGGGCACCGCCCGAGGUGCUCAACUACACGCGCUUCUCUUCCAAAAGCGAUGUGUGGGCUUACGGUGAGU-----------AGAUCUUAAAAUAAAGAAAG-G ....((((...((((((((......)))))))).((((((((((((.........))))).)))))))......))))...-----------...((((......))))...-. ( -33.10) >DroGri_CAF1 51462 95 - 1 UCCCCAUCAAAUGGGCACCGCCCGAGGUGCUCAACUACACACGCUUCUCAUCCAAGAGCGAUGUGUGGGCCUAUGGUGAGUGCC--------AGAUCA--AAAUA--------- .....(((...(((((...))))).((..(((..(((((((((((.((......)))))).)))))))(((...))))))..))--------.)))..--.....--------- ( -34.70) >DroWil_CAF1 43729 98 - 1 UUCCCAUCAAAUGGGCACCACCGGAAGUGCUCAACUAUACGCGCUUCUCAUCGAAAAGUGAUGUCUGGGCUUAUGGUGAGUAAUU------CAAAACGAAA----------AAU ..(((((...)))))........(((.((((((.(((((.((.(....(((((.....)))))...).)).))))))))))).))------).........----------... ( -25.80) >DroYak_CAF1 42347 103 - 1 UCCCCAUUAAGUGGGCACCGCCCGAAGUGCUCAACUACACGCGCUUCUCCUCUAAGAGCGAUGUGUGGGCAUACGGUGAGUUUUUGUCGCAUACAACGAAA----------G-A ..(((((...)))))((((((((..(((.....)))(((((((((.((......)))))).)))))))))....))))..(((((((........))))))----------)-. ( -30.40) >DroAna_CAF1 47474 92 - 1 UCCCCAUCAAGUGGGCACCGCCCGAGGUCCUCAACUAUACGCGCUUCUCCUCCAAGAGCGAUGUCUGGGCUUACGGUGAGUUUUUCUU-----------AA----------U-U ..(((((...)))))(((((....((((((...((.((.(((.(((.......))).)))))))..)))))).)))))..........-----------..----------.-. ( -24.00) >consensus UCCCCAUCAAAUGGGCACCGCCCGAAGUGCUCAACUACACGCGCUUCUCCUCCAAGAGCGAUGUGUGGGCUUACGGUGAGUACUU_______ACAACG_AA__________G_U ....((((...(((((((........))))))).((((((((((((.........))))).)))))))......)))).................................... (-24.60 = -24.63 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:30 2006