Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,248,791 – 8,248,911 |
Length | 120 |
Max. P | 0.977713 |
Location | 8,248,791 – 8,248,911 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.61 |
Mean single sequence MFE | -43.55 |
Consensus MFE | -27.78 |
Energy contribution | -26.73 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.56 |
Mean z-score | -2.28 |
Structure conservation index | 0.64 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8248791 120 + 22407834 UGCUGGGUUAUGAUCUUGACGUACCUUCUCGGGAGAGUAGGCUCCUGGAGCAGGAGUAUCACUUGGCUUUUGAAGGUCGUGACGACCGGCAAAGGAGUACGCUGGAUUGUGGUCCAACCU ...(((..((..((((.(.(((((((.(((....))).))(((((((...))))))).........((((((..(((((...)))))..)))))).)))))).))))..))..))).... ( -47.20) >DroGri_CAF1 34380 120 + 1 UGCUGGAUUGUGAUCUUGGCGAACCUUCUCAGGAGAGUAUGCUCCAGGAGCAGGUGUUUCACUUGGCUUUUGGAGGUCAUGACGACCAGCGAAAGAAAAUGCUGGAUUAUGAUCUAGUCG .(((((((..((((((.((((.(((((.....))).)).(((((((((((((((((...))))).)))))))))((((.....)))).)))........))))))))))..))))))).. ( -45.50) >DroWil_CAF1 29546 120 + 1 GGCAGGAUUGUGAUCUUGUCUAACCUUUUCGGGAGAGUAAGCACCUGGAGCGGGGAUGUCAUUAGCUUUGUGAAGGUCGUGACGACCAGCAAACGAAAACGAGGGAGUGUGGUCAAGCCU (((..(((..((.((((((....((.(((((((.(......).))))))).))((.((((((.(.(((....))).).)))))).))...........))))))...))..)))..))). ( -35.80) >DroMoj_CAF1 32323 120 + 1 GGCAGGAUUGUGAUCCUGACGGACUUUUUCGGGAGAGUACGCUCCAGGAGCAGGAGUAUCGCUUGGUUUGUGAAGAUCAUGGCGGCCAGCGAAAGAAUAGGCGGGAUUAUGGUCUAGUCU (((.((((..((((((((((...((.((((.((((......)))).)))).))..)).(((((.((((..((.....))..)..)))))))).........))))))))..)))).))). ( -43.90) >DroAna_CAF1 34274 120 + 1 UGCGGGAUUGUGAUCUUGACGUACUUUCUCCGGGGAGUAGGCUCCUGGAGCUGGAGUAUUGUCAGGUUUGUGGAGGUCAUGUCGUCCAGCAAACGAAAAAGCGGGGUUGUGAUCUUGUCU .(((((((((..((((((((((((((((((((((.((....)))))))))..)))))).))))..(((((((((.(......).)))).)))))........)))))..))))))))).. ( -47.10) >DroPer_CAF1 35833 120 + 1 AGCGGGGUUAUGAUCUUGUCGGUUCUUUUCGGGAGAAUAAGCUCCAGGAGCGGGAGUAUCACUUGGCUUAUGGAGGUCGUGGCGACCAGCAAGGGAGAAGGAAGGAUUGUGAUCUUGUCU .(((((((((..(((((..(..((((((((....)))...((((((.((((.(.((.....))).)))).))))(((((...))))).))..)))))..)..)))))..))))))))).. ( -41.80) >consensus UGCAGGAUUGUGAUCUUGACGAACCUUCUCGGGAGAGUAAGCUCCAGGAGCAGGAGUAUCACUUGGCUUGUGAAGGUCAUGACGACCAGCAAAAGAAAACGCGGGAUUGUGAUCUAGUCU .(((((((((((((((((.....(((.(((.((((......))))..))).)))............(((.((..((((.....))))..)).)))......))))))))))))))))).. (-27.78 = -26.73 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:24 2006