Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,241,595 – 8,241,715 |
Length | 120 |
Max. P | 0.892670 |
Location | 8,241,595 – 8,241,715 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -26.74 |
Energy contribution | -27.90 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.13 |
Mean z-score | -2.47 |
Structure conservation index | 0.70 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8241595 120 + 22407834 AGAGGAAAUGAGAUUAUUGGCCGCAUUUUCCUUGGCCAAAAGUUGGUAGAAAUCGUCGGCAAAGCGACAAGAUACCGACGUGGCCAAAAGAAGCAGACCUGCGUUGCAAUUAUUACCUAU ..(((.(((((........((.((...(((.(((((((...(((((((......((((......))))....))))))).)))))))..)))(((....))))).))..))))).))).. ( -36.60) >DroSec_CAF1 19711 120 + 1 AGAGGAUAUGAGAUUUUCGGCCACAUUUUCCUUGGCCAAAAGUUGGUAGAAAUCGUCGGCAAAGCGACAAGAUACCGACGUGGCCAAAAGGAGCAGACCUGCGGUGCAAUUGUUACCUAU .((((((.....)))))).(((......((((((((((...(((((((......((((......))))....))))))).))))))..))))(((....))))))............... ( -38.70) >DroSim_CAF1 19853 120 + 1 AGAGGAUAUGAGAUUAUUGGCCACAUUUUCCUUGGCCAAAAUUUGGUAGAAAUCGUCGGUAAAGCGACAAGAUACCGACGUGGCCAAAAGCAGCAGACCUGCGGUGCAUUUGUUACCUAU ..(((...........((((((((..((((....((((.....)))).))))..(((((((...(.....).)))))))))))))))..((((((....)))..)))........))).. ( -37.80) >DroEre_CAF1 20851 120 + 1 AGAGGAAAUGAUAUUCUCGUUUGCAUAUUUCUUGGCCAAAAGUUGGUAGAAAUCGUCGGUAAAGCGACAGGUCACCGACGUGGCCAAAAGAAGCAGACCUGCGGUGCAAAUAUUACUUAU .(((((.......)))))((((((((..((((((((((...((((((.((..(.((((......)))))..)))))))).))))))..))))(((....))).))))))))......... ( -42.50) >DroYak_CAF1 23212 120 + 1 CGAGGAAAUGAGAUUCUUGUUGGCAUUCUUCUUGGCCAAAAGCUGGUAGAAGUCGUCGGUGAAGCGGCAAGACACCGACGUGGCCAAAAGGAGCAGACCUGUGGUGCAAAUAUUGAGUAU ............((((.((((.((((((((.(((((((...(((......)))((((((((...(.....).))))))))))))))).))))(((....))).)))).))))..)))).. ( -36.30) >consensus AGAGGAAAUGAGAUUAUUGGCCGCAUUUUCCUUGGCCAAAAGUUGGUAGAAAUCGUCGGUAAAGCGACAAGAUACCGACGUGGCCAAAAGAAGCAGACCUGCGGUGCAAUUAUUACCUAU .(((((.......)))))....((((.....(((((((...(((((((......((((......))))....))))))).))))))).....(((....))).))))............. (-26.74 = -27.90 + 1.16)
Location | 8,241,595 – 8,241,715 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -26.20 |
Energy contribution | -25.40 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.28 |
Mean z-score | -1.89 |
Structure conservation index | 0.81 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8241595 120 - 22407834 AUAGGUAAUAAUUGCAACGCAGGUCUGCUUCUUUUGGCCACGUCGGUAUCUUGUCGCUUUGCCGACGAUUUCUACCAACUUUUGGCCAAGGAAAAUGCGGCCAAUAAUCUCAUUUCCUCU ..(((.(((...(((...)))((.((((((((((.(((((.((.((((..((((((......))))))....)))).))...)))))))))))...)))))).........))).))).. ( -32.70) >DroSec_CAF1 19711 120 - 1 AUAGGUAACAAUUGCACCGCAGGUCUGCUCCUUUUGGCCACGUCGGUAUCUUGUCGCUUUGCCGACGAUUUCUACCAACUUUUGGCCAAGGAAAAUGUGGCCGAAAAUCUCAUAUCCUCU ...(((.........)))(((....)))...(((((((((((((((((...........)))))))..(((((.(((.....)))...)))))...)))))))))).............. ( -33.60) >DroSim_CAF1 19853 120 - 1 AUAGGUAACAAAUGCACCGCAGGUCUGCUGCUUUUGGCCACGUCGGUAUCUUGUCGCUUUACCGACGAUUUCUACCAAAUUUUGGCCAAGGAAAAUGUGGCCAAUAAUCUCAUAUCCUCU ...(((.........)))((((.....))))..(((((((((((((((...........)))))))..(((((.(((.....)))...)))))...))))))))................ ( -34.30) >DroEre_CAF1 20851 120 - 1 AUAAGUAAUAUUUGCACCGCAGGUCUGCUUCUUUUGGCCACGUCGGUGACCUGUCGCUUUACCGACGAUUUCUACCAACUUUUGGCCAAGAAAUAUGCAAACGAGAAUAUCAUUUCCUCU ..........((((((..(((....)))...((((((((((((((((((.........)))))))))...............)))))))))....)))))).(((((......)).))). ( -31.76) >DroYak_CAF1 23212 120 - 1 AUACUCAAUAUUUGCACCACAGGUCUGCUCCUUUUGGCCACGUCGGUGUCUUGCCGCUUCACCGACGACUUCUACCAGCUUUUGGCCAAGAAGAAUGCCAACAAGAAUCUCAUUUCCUCG .....................(((....((.(((((((((((((((((...........)))))))).((......))....))))))))).))..)))..................... ( -28.40) >consensus AUAGGUAAUAAUUGCACCGCAGGUCUGCUCCUUUUGGCCACGUCGGUAUCUUGUCGCUUUACCGACGAUUUCUACCAACUUUUGGCCAAGGAAAAUGCGGCCAAGAAUCUCAUUUCCUCU ...........(((((..(((....)))...(((((((((((((((((...........))))))))...............)))))))))....))))).................... (-26.20 = -25.40 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:17 2006