Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,237,204 – 8,237,298 |
Length | 94 |
Max. P | 0.808317 |
Location | 8,237,204 – 8,237,298 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 78.99 |
Mean single sequence MFE | -17.11 |
Consensus MFE | -10.94 |
Energy contribution | -10.81 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.17 |
Mean z-score | -1.93 |
Structure conservation index | 0.64 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8237204 94 - 22407834 AGGGAAAUAAGA-AAAUAUAUGUAUAUAUAUAUAUAAAAGCAAUCUUAUUUCCGUCGGGAAUAAAAUGGCA-GAAGGCAGCCAGCCAGUCAAAACA ..((((((((((-...((((((((....)))))))).......))))))))))((...((......((((.-.......)))).....))...)). ( -21.70) >DroSec_CAF1 15353 87 - 1 AGGGAAAUAAGU-AAAUAU--------AUAUAUAUAAGAGCCAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA ..(((((((((.-......--------.................)))))))))..................(((.(((.....)))..)))..... ( -13.96) >DroSim_CAF1 15472 87 - 1 AGGGAAAUAAGU-AAAUAU--------AUAUAUACAAGAGCAAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA ..((((((((((-(.((..--------..)).)))..((....))))))))))..................(((.(((.....)))..)))..... ( -14.10) >DroEre_CAF1 17045 87 - 1 AGGGAAAUAGGACAAAUUU----ACUCGUAUGUGUAACUGCAAUCUUGUUUCCUCCGGGAAUAAAACAAAAUGAAGGCAGUCAGGC-----ACACA .(((((((.......))))----.)))...(((((.(((((..((((((((((....)))....)))))...))..)))))...))-----))).. ( -18.70) >consensus AGGGAAAUAAGA_AAAUAU________AUAUAUAUAAGAGCAAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA ..(((((((((.................................)))))))))......................(((.....))).......... (-10.94 = -10.81 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:13 2006