Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,224,350 – 8,224,470 |
Length | 120 |
Max. P | 0.818718 |
Location | 8,224,350 – 8,224,470 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.83 |
Mean single sequence MFE | -47.62 |
Consensus MFE | -27.67 |
Energy contribution | -27.62 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.38 |
Mean z-score | -1.72 |
Structure conservation index | 0.58 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8224350 120 - 22407834 CGGUCUGUGCGUCUUCCUCGCCGUGCGCUACCAGAAGGAGCACAAGCGGCAUCUGGCCCUUAAGGCAGCCGGAUUGGCCAACUUCGAGGAGGGCGCCGUGGGACACAUCAAUCCCGAUCU .((((.(.(((((((((((((..((.(((.((....))))).)).))((((((((((((....))..)))))))..)))......))))))))))))..((((........)))))))). ( -54.70) >DroVir_CAF1 2937 120 - 1 UGCACUCUGCGCCUUCCUGGCCGUACGCUAUCGGGAGGAGCGCAAAAAUCAUUUGGCCUUAAAGUCCGCGGGACUGGCCAACUUUGAAGAGGGCGAUGUGGCGCAAAUAAAUCCGGCGCU .((.((((((((((((((((..(....)..)))))))).)))).....(((.((((((....(((((...)))))))))))...))))))).)).....(((((...........))))) ( -46.50) >DroPse_CAF1 6005 120 - 1 AAGCCUUUGCGCCUUUCUGGCGGUGCGCUACCACAAGGAGCGCAAGCGUCAUUUGGCUUUGAAGGCCGCCGGUUUGGCCAACUUCGAGGAGGGCGCCGUGGAACAUAUCAAUCCUUCUUU ...((...(((((((((((((((((((((.((....)))))))((((........)))).....))))))((.....)).......))))))))))...))................... ( -47.00) >DroGri_CAF1 4141 120 - 1 UGCGUUGUGCGCCUUCCUUGCCGUACGCUAUCGCCAGGAGCGUAAACAUAAUCUGGCCCUGAAGGCAGCCGGCUUGGCCAACUUUAUGGAUGGCGAUGUGGAGCAAAUUAAUCCGGCCAU .((.....))((((((...((((((((((.((....)))))))).........))))...)))))).(((((.(((((((.((....)).))))..((.....))...))).)))))... ( -38.10) >DroMoj_CAF1 2807 120 - 1 UGCCCUCUGCAUUUUCCUGGGCAUACGCUAUCGACAGGAGCGUCGGCGUCAUUUGGCCUUGAAGGCCGCUGGUUUGGCCAACUUUGUUGAGGGCGAUGUGGAGCAGAUCAAUCCGGCUCU .((((((.(((..(((..((.((.((((...((((......))))))))....)).))..)))(((((......))))).....))).)))))).....(((((.((....))..))))) ( -43.40) >DroAna_CAF1 10118 120 - 1 CAGCCUAUGCGCCUUCCUUGCCGUUCGCUACCACAAGGAGCACAAGCGGCACCUGGCCCUGAAGGCCGCCGGCCUGGCCAACUUUGAGGAGGGCGCCGUGGCACACAUCAAUCCAGAUCU ..(((...(((((((((((((((((.(((.((....)))))...))))))...(((((....(((((...)))))))))).....)))))))))))...))).................. ( -56.00) >consensus UGCCCUCUGCGCCUUCCUGGCCGUACGCUACCACAAGGAGCGCAAGCGUCAUCUGGCCCUGAAGGCCGCCGGAUUGGCCAACUUUGAGGAGGGCGACGUGGAACAAAUCAAUCCGGCUCU ....(..(((((((((((.....((((((.((....)))))))).........(((((....((((.....)))))))))......))))))))).))..)................... (-27.67 = -27.62 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:12 2006