Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,219,093 – 8,219,200 |
Length | 107 |
Max. P | 0.784625 |
Location | 8,219,093 – 8,219,200 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -22.01 |
Energy contribution | -21.60 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.39 |
Mean z-score | -1.17 |
Structure conservation index | 0.73 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8219093 107 + 22407834 UGUGAUCAUCCCUCAAU-C-UUACCGCAUGAACAUCCUUGUUUUUGGAGCGAGCCUUCUCCAGGUUUCGAUUGGCCGCUUCAUAAGCAGCCAAACACCGCAGUCGCCGG .(((((...........-.-...(((...(((((....))))).))).((((((((.....)))))..(.(((((.(((.....))).))))).)..))).)))))... ( -26.60) >DroVir_CAF1 7594 95 + 1 -------------UAAUCA-UUACCGCAUGAACAUCCUUGUUCUUGGAACGCGCCUUCUCCAAAUUUCGAUUGGCUGUCUCGUAGGCAGCCAAACAACGUAGGCGUCGU -------------......-...(((...(((((....))))).))).((((((((.(((........))(((((((((.....))))))))).....).))))).))) ( -30.20) >DroPse_CAF1 6610 98 + 1 ---------CCAAAAAU-C-UUACCGCAUGAACGUCUUUGUUCUUGGAGCGAGCCUUUUCCAAAUUGCGAUUGGCCGUCUCGUAGGCGGCCAGGCAGCGCAGGCGUCGU ---------........-.-...(((...(((((....))))).))).((((((((..........(((.(((((((((.....)))))))))....))))))).)))) ( -34.00) >DroMoj_CAF1 9490 96 + 1 -------------CAAAUAUUUACCGCAUGCACAUCCUUGUUCUUAGAGCGCGCCUUCUCCAAGUUGCGAUUGGCUGUCUCGUAGGCAGCCAAGCAGCGUAGGCGACGU -------------...................................((((((((.......(((((...((((((((.....)))))))).)))))..))))).))) ( -31.10) >DroAna_CAF1 8120 107 + 1 UUCAACCCUGACCCAAU-C-UUACCGCAUGGACGUCCUUAUUCUUUGAGCGAGCCUUCUCCAGAUUCCUGUUGGCCGUCUCGUAGGCAGCCAAACAUCGCAGGCGUCUG .................-.-.........(((((((.(((.....)))((((........(((....)))(((((.(((.....))).)))))...)))).))))))). ( -25.10) >DroPer_CAF1 6616 98 + 1 ---------CCAAAAAU-C-UUACCGCAUGAACGUCUUUGUUCUUGGAGCGAGCCUUUUCCAAAUUGCGAUUGGCCGUCUCGUAGGCGGCCAGGCAGCGCAGGCGUCGU ---------........-.-...(((...(((((....))))).))).((((((((..........(((.(((((((((.....)))))))))....))))))).)))) ( -34.00) >consensus _________CC__CAAU_C_UUACCGCAUGAACAUCCUUGUUCUUGGAGCGAGCCUUCUCCAAAUUGCGAUUGGCCGUCUCGUAGGCAGCCAAACAGCGCAGGCGUCGU ........................(((..(((((....)))))((((((........)))))).......(((((((((.....))))))))).........))).... (-22.01 = -21.60 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:11 2006