Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,206,936 – 8,207,035 |
Length | 99 |
Max. P | 0.970678 |
Location | 8,206,936 – 8,207,035 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 76.21 |
Mean single sequence MFE | -39.63 |
Consensus MFE | -24.23 |
Energy contribution | -24.35 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.52 |
Mean z-score | -2.19 |
Structure conservation index | 0.61 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8206936 99 - 22407834 ----GCAGAAGUUGAGUUGGCAUCUGGACCUGGGGUUGAGUAGUGUCUGGAGUUGGUGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----.(((...(((((..(((.(((....(((((((((((.(((((((...........))))))))))))))))))))).)))))))).))).......... ( -35.90) >DroSec_CAF1 9853 99 - 1 ----GCAAAAGUUGAGGUGGCAUCUGCACCUGGGGUAGAGUAGUGUCUGGAGUUGGAGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----.........((((((((.(((((.(....))))))....(.(((((((((((((......))).)))))))))).).)))(((.....)))..))))). ( -38.20) >DroEre_CAF1 9823 99 - 1 ----GCAAAAGUUGAGGUAGCAUCUGCACCUGGGGUUGCGUAGUGUCUGGAGUUGGAGGUGAUACUCUCAACUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----..........((((.((....))))))((((((((.((((.(((((((((((((......))).))))))))))((.....))..)))).)))))))). ( -40.60) >DroYak_CAF1 9962 99 - 1 ----GCAAAAGUUGAGGUAGCAUCUGUACCUGUGGUUGAGCAGUAUCUGGAGUUGGGGGAGACACCCUCAACUCCGGAGAAGCCUUCAGGCUGAGUAGCCUUU ----..........(((((.(....))))))..(((((..(....((((((((((((((.....))))))))))))))..((((....)))))..)))))... ( -40.90) >DroAna_CAF1 8665 99 - 1 ----AAAGCAGCCGGGGUAGCAUCUCCAGCUUAGGUUGGCUGGUGUCCGGAGUGGGCGGGGAAACUCUGAGCUCUGGUGAAGCCUUGAGGGAUAGAAGUCUCU ----........((((((..((.(.((((((......)))))).).(((((((...((((....).))).)))))))))..))))))((((((....)))))) ( -38.10) >DroPer_CAF1 17776 103 - 1 GGAUGUAGCAGUCGCGGCAGCAUCUCCUGCCUGGGCUGUGAGGUGUCCGGCGUGGGUGGUGAGACCCUCAGCUCGGGGGAGGCCUUCAGGCUCAGCAAUCGCU .(((......)))((((..((..((((..(((((((((.(.(((.(((.((....)).).)).)))).)))))))))))))(((....)))...))..)))). ( -44.10) >consensus ____GCAAAAGUUGAGGUAGCAUCUGCACCUGGGGUUGAGUAGUGUCUGGAGUUGGAGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU .............(((((.((.((.((.....(((((........(((((((((((.((.....)).)))))))))))..)))))....)).)))).))))). (-24.23 = -24.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:10 2006