Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,204,080 – 8,204,179 |
Length | 99 |
Max. P | 0.510442 |
Location | 8,204,080 – 8,204,179 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -19.86 |
Energy contribution | -20.38 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.09 |
Mean z-score | -1.44 |
Structure conservation index | 0.82 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8204080 99 + 22407834 AUUAAAAGUGGUACUUAAGUCCC-UACAACCACAAUGUCCAUGUCCAUGUGAAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUC-------------- .....((((((((((((((.((.-.....(((.(((.(((((....))).)).))).)))......)).))))......)))))).))))..........-------------- ( -21.00) >DroSec_CAF1 6976 108 + 1 AUUAAAAGUGGGACUUUAGUCCC-UACAACUACAAU-----UCUCCAUGUGGAGUUAUGGGAUCCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA .......(((((((((..(((((-.((..(((((..-----......))))).))...)))))..))))))))).(((((....)))))......................... ( -27.00) >DroSim_CAF1 7438 108 + 1 AUUAAAAGUGGGACUUUAGUCCC-UACAACUACAAU-----UCUCCAUGUGGAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA .......(((((((((...((((-.((..(((((..-----......))))).))...))))...))))))))).(((((....)))))......................... ( -25.60) >DroEre_CAF1 7061 109 + 1 AUUAAAAGUGGGACUUUAGUCCCAUGCAUCAACAAU-----UCACCAUGUGGAGUUAUGGGAAUCAGGUCUUAUCAGCAGGUGCUUGCUUAUUAUUCAUCAAAUAUCAGAUCAA .......(((((((....))))))).........((-----((.(((((......)))))))))..(((((....(((((....)))))((((........))))..))))).. ( -25.00) >DroYak_CAF1 6971 108 + 1 AUUAAAAGUGGGACUUUAGUCCC-UUCAUCUAGAAU-----UCACCAUGUGGGCUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUUAAAUCAA .......(((((((((...((((-(((.....))).-----...((....))......))))...))))))))).(((((....)))))......................... ( -23.10) >consensus AUUAAAAGUGGGACUUUAGUCCC_UACAACUACAAU_____UCUCCAUGUGGAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA .......(((((((((...((((......(((((.............)))))......))))...))))))))).(((((....)))))......................... (-19.86 = -20.38 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006