Locus 2863

Sequence ID 2L_DroMel_CAF1
Location 8,196,903 – 8,196,998
Length 95
Max. P 0.580945
window4549

overview

Window 9

Location 8,196,903 – 8,196,998
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 86.11
Mean single sequence MFE -21.14
Consensus MFE -15.12
Energy contribution -16.28
Covariance contribution 1.16
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.580945
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8196903 95 - 22407834
GCAUCCGAUUUAAAUCACCCGCUCUGCCUUUAACGAUUGGUCUUCAACAAUCGAUUUUAGCUUAGAGCAUUGCCAGAUCGCAAUGAAAAGCUGCU
(((.................((((((.((..((((((((........)))))).))..))..))))))(((((......))))).......))). ( -21.80)
>DroSec_CAF1 23601 95 - 1
CUUUCCGUUUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCUACAACAAUCGAUUUUAGCUUACAGCAUUGCCAGAUCGCAAUGAAAAGCUGCU
......(((..((((((.......)))))).)))(((((........))))).....((((((....((((((......))))))..)))))).. ( -21.60)
>DroSim_CAF1 24136 95 - 1
CCAUCCGUUUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCCACAACAAUCGAUUUUAGCUUACAGCAUUGCCAGAUCGCAAUGAAAAGCUGCU
(((..((((..((((((.......)))))).))))..))).................((((((....((((((......))))))..)))))).. ( -22.00)
>DroEre_CAF1 23901 94 - 1
GCUUCCGAUUCAAAUUACCCGCUCUGUUUUUAACGAUUGCUCUUCCAGAAUCGAUAUUACCCCGCAGCGUUGCCGUAUCGCAUCGA-AAGCUGCU
.....((((((.........((..(((.....)))...)).......))))))..........(((((..(((......)))....-..))))). ( -16.29)
>DroYak_CAF1 23908 94 - 1
GCUUCCGAUUUAAAUUACCCGCUCAGCUUUUAUCGAUUGGUCU-CCACAAUCGAUUUUAGCUCACAGCAUUGCCGGAUCGCAACGAAAAGCUGCU
((((.((.............(((.((((...((((((((....-...))))))))...))))...))).((((......))))))..)))).... ( -24.00)
>consensus
GCUUCCGAUUUAAAUCACCCGCUCUGAUUUUAACGAUUGGUCUACAACAAUCGAUUUUAGCUUACAGCAUUGCCAGAUCGCAAUGAAAAGCUGCU
....................((...........((((((........)))))).....(((((....((((((......))))))..))))))). (-15.12 = -16.28 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006