Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,196,760 – 8,196,850 |
Length | 90 |
Max. P | 0.539744 |
Location | 8,196,760 – 8,196,850 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.92 |
Mean single sequence MFE | -18.73 |
Consensus MFE | -9.49 |
Energy contribution | -9.64 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.22 |
Mean z-score | -1.94 |
Structure conservation index | 0.51 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539744 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8196760 90 - 22407834 CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUGAAAACAUCGAAAAUAAUCCCAUAUUA ((((((((-----(......)))))))))........----........((((((........(....).......))))))................. ( -17.36) >DroVir_CAF1 44331 92 - 1 UUAUUAAAGCCACAAAUCACGUGUAAUUG---AAGUCAACUACAAUGCGUAAUGUGCCGAAAUCGUGCGUAUUCAA--AUCAAA--UACAAUUAUUUCC ........(.((((...(.((((((.(((---....))).))).))).)...)))).)(((((.((..(((((...--....))--))).)).))))). ( -13.20) >DroSec_CAF1 23458 90 - 1 CAAUUGCA-----AUAUAAUUUGCAAUUGUUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUAGAAAAUAAUCCCAGAUUA ((((((((-----(......)))))))))........----.(((((((((((........)))))..))))))......................... ( -19.90) >DroSim_CAF1 23993 90 - 1 CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAAUGAAGCAUCGAAAUUAAUCCCAGAUUA ((((((((-----(......)))))))))(((..((.----..(((...((((((..((....(....)...))..))))))..)))..)).))).... ( -19.70) >DroEre_CAF1 23758 90 - 1 CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGGA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUAGAAAAUAGUCGCAGAUAA ((((((((-----(......)))))))))(((.....----.(((((((((((........)))))..)))))).......((......)).))).... ( -21.10) >DroYak_CAF1 23765 90 - 1 CAAUUGCA-----AUAUAAUUUGCAAUUGCUUUAGGA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGCAUUAAAGCCUCGAAAAUGAUCACAGAUUA ((((((((-----(......))))))))).((.(((.----..((((((((((........)))))..)))))....))).))................ ( -21.10) >consensus CAAUUGCA_____AUAUAAUUUGCAAUUGCUGAAGAA____ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUCGAAAAUAAUCCCAGAUUA ((((((((.............))))))))..............((((((((((........)))))..))))).......................... ( -9.49 = -9.64 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:07 2006