| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,196,288 – 8,196,399 |
| Length | 111 |
| Max. P | 0.636852 |
| Location | 8,196,288 – 8,196,399 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -38.53 |
| Consensus MFE | -24.83 |
| Energy contribution | -25.53 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8196288 111 + 22407834 GCAAUACACACUGUCCCGCACCGAUCCCACCACCUGGUCGGUGCUCAUCACCGGAAACAAACCGGUGAUGGGACUCUGGUAUCGCAGCAGUUGACGCUUGACUGA---GGGAAG------ ((.((((.((..((((((((((((((.........)))))))))..((((((((.......)))))))))))))..)))))).))..((((..(...)..)))).---......------ ( -49.10) >DroVir_CAF1 43215 111 + 1 ACAAUAGACACUGUCACGCACCGAUCCCACCACCUGAUCGGUGCUCAUCACCGGAAACAGGCCUGUGAUGGGGCUCUGAUAGCGCAGCAGCUGGCGUUUAACUAC---AGGAGG------ ....(((((.((((((((((((((((.........)))))))))......(((....).))...)))))))(((((((......))).))))...))))).....---......------ ( -36.90) >DroGri_CAF1 45278 119 + 1 ACAAUAGACACUGUCACGCACCGAACCCACCACCUGAUCGGUGCUCAUCACCGGAAAUAGGCCAGUGAUGGGACUCUGGUAGCGGAGCAGCUGGCGUUUAACUGAGACAAGGGG-GGUUU ......(((...))).......((((((....(((..(((((.((((((((.((.......)).)))))))).....(.((((......)))).).....)))))....))).)-))))) ( -36.80) >DroWil_CAF1 31276 112 + 1 ACAAUAGACACUAUCACGAACGGAUCCGACCACCUGAUCUGUACUCAUAACAGGAAAUAGACCUGUUAUGGGACUCUGGAAGCGCAGCAAUUGUCGUUUCACUGU---GAGAAGG----- ..........((.(((((.(((((((.(.....).))))))).(((((((((((.......)))))))))))......(((((((((...))).))))))..)))---))..)).----- ( -34.60) >DroMoj_CAF1 43519 111 + 1 ACAGUAGACACUGUCCCGUACCGAACCCACGACUUGGUCGGUGCUCAUCACCGGAAACAGGCCAGUGAUGGGACUCUGGUAGCGCAGCAGUUGGCGUUUAACUAA---AGGUGG------ ........((((((((((((((((.((........)))))))))..(((((.((.......)).))))))))))..(((((((((........)))))..)))).---.)))).------ ( -39.00) >DroAna_CAF1 22899 108 + 1 ACAGUAGACACUGUCCCGCACGGAUCCAACAACCUGAUCGGUGCUCAUCACCGGGAACAAUCCUGUGAUCGGGCUCUGGUACCGCAGCAGUUGUCGUUUGACUAU---GGG--------- (((((....)))))(((((.(((..(((....(((((((((((.....))))((((....))))..)))))))...)))..)))..))....(((....)))...---)))--------- ( -34.80) >consensus ACAAUAGACACUGUCACGCACCGAUCCCACCACCUGAUCGGUGCUCAUCACCGGAAACAGGCCUGUGAUGGGACUCUGGUAGCGCAGCAGUUGGCGUUUAACUAA___AGGAGG______ ....(((((........(((((((((.........)))))))))(((((((.((.......)).)))))))(((((((......))).))))...))))).................... (-24.83 = -25.53 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006