Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,193,011 – 8,193,105 |
Length | 94 |
Max. P | 0.993311 |
Location | 8,193,011 – 8,193,105 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 72.63 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -13.80 |
Energy contribution | -13.72 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -2.37 |
Structure conservation index | 0.62 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8193011 94 - 22407834 UCAUAUUUUUAAAGUUCUA--------CUUACACAUUAUUUUU----UAUUAGGUGGAACCUGUGCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA .............((((((--------((((............----...)))))))))).(((((.......((((((....))))))......)))))...... ( -21.48) >DroSec_CAF1 19680 98 - 1 GCUCAUUUUCAAAGUACUA--------AUUUCUUUUUUUUUUUAUUAAAUUAGGUGGAACCUGUGCAAAUCUGGAGCUCGACAGAGCUCAUUAAAGUAUAUCAACA ((.((.(((((.....(((--------((((...............))))))).)))))..)).)).......((((((....))))))................. ( -18.06) >DroSim_CAF1 20219 94 - 1 GCUUAUUUUCAAAGUACUA--------AUUAAACCUUUUUUUU----AAUUAGGUGGAACCUGUCCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA ((((............(((--------((((((.......)))----)))))).((((.....))))......((((((....))))))....))))......... ( -19.90) >DroEre_CAF1 20040 94 - 1 GCGUAUUUUGAAACA-------AGCAUAUCUAAACAUU-UUUU----GAACAGGUGGAACCUGUGCAAAUUUGGAGCUCCACCGAGCUCAUAAAAGUAUAUCAACA ..(((((((......-------............((..-.(((----(.(((((.....))))).))))..))((((((....))))))...)))))))....... ( -22.70) >DroYak_CAF1 20103 102 - 1 GUAUUUUUUCAAACUACUAGACAGCAUAUUUAACAAUUUUUUU----GAACAGGUCGAACCUGUGCAAAUUUGGAGCUCCACCGAGCUCAUAAAAGUAUAUCAACA ((((((((.........................(((....(((----(.(((((.....))))).)))).)))((((((....))))))..))))))))....... ( -22.50) >DroPer_CAF1 21106 94 - 1 UCAU--CCUACAGGUGAAA-----AAUCAUUAACUUUA-UUAU----UUCCAGGUGGAGCCGGUGCAGAUCUGGAGCUCUACGGAGCUCAUCAAAGUGUACCAGCA ((((--(.....)))))..-----..............-....----.(((....)))((.((((((......((((((....)))))).......)))))).)). ( -29.72) >consensus GCAUAUUUUCAAAGUACUA________AUUUAACAUUUUUUUU____AAUCAGGUGGAACCUGUGCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA ..................................................((((.....))))..........((((((....))))))................. (-13.80 = -13.72 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:04 2006