Locus 2858

Sequence ID 2L_DroMel_CAF1
Location 8,182,966 – 8,183,064
Length 98
Max. P 0.940458
window4544

overview

Window 4

Location 8,182,966 – 8,183,064
Length 98
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 85.22
Mean single sequence MFE -18.34
Consensus MFE -13.58
Energy contribution -13.42
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -2.38
Structure conservation index 0.74
SVM decision value 1.29
SVM RNA-class probability 0.940458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8182966 98 + 22407834
GUUUUUCAACUGCGCCCGCAAUAUCAAGCUGCCGACCAG---CAGUUGGGUGCACUCACCUUAAAAUACUGUACAAAAAAAACAAAAAAUCAUAUAAAAAC
(((((((((((((..(.(((.........))).)....)---))))))((((....)))).................)))))).................. ( -18.00)
>DroSec_CAF1 9764 82 + 1
GUUUUUCAACUGCGCCCGCAAUAUCAAGCUGCCGACCAG---CAGUUGGGCGCACUCACCUUAAAAUACUGUACAAAAAA-ACAAA---------------
((((((.....(((((((.........(((((......)---)))))))))))((...............))....))))-))...--------------- ( -19.36)
>DroSim_CAF1 10254 95 + 1
GUUUUUCAACUGCGCCCGCAAUAUCAAGCUGCCGACCAG---CAGUUGGGCGCACUCACCUUAAAAUACUGUACAAAAAA-ACAAAA--ACAUAUAAAAAC
((((((....((((((((.........(((((......)---))))))))))))................((........-))))))--)).......... ( -20.90)
>DroEre_CAF1 9957 86 + 1
GUUUUUCAACUGCGCCCGCCAUAUCAACCUGCCGACCAG---CAGUUGGGCGCACUCACCUCAAAAUACUGUACAAA--A-A--------CAUACA-AAAC
((((((....((((((((..........((((......)---))).)))))))).......((......))...)))--)-)--------).....-.... ( -17.00)
>DroYak_CAF1 9955 91 + 1
GUUUUUCAACUGCGCCCGCCAUAUCAACCUGCCGACCAGCAGCAGUUGGGCGCACUCACCUUAAAAUACUGUACAAAAGA-A--------CAUACA-AAAC
((((((.....(((((((........((((((......))))..)))))))))((...............))....))))-)--------).....-.... ( -16.46)
>consensus
GUUUUUCAACUGCGCCCGCAAUAUCAAGCUGCCGACCAG___CAGUUGGGCGCACUCACCUUAAAAUACUGUACAAAAAA_ACAAA____CAUACA_AAAC
..........(((((((((...........)).(((........))))))))))............................................... (-13.58 = -13.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006