Locus 2856

Sequence ID 2L_DroMel_CAF1
Location 8,180,680 – 8,180,788
Length 108
Max. P 0.585065
window4542

overview

Window 2

Location 8,180,680 – 8,180,788
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.22
Mean single sequence MFE -34.82
Consensus MFE -24.93
Energy contribution -25.88
Covariance contribution 0.95
Combinations/Pair 1.39
Mean z-score -1.32
Structure conservation index 0.72
SVM decision value 0.10
SVM RNA-class probability 0.585065
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8180680 108 + 22407834
CUGGCACCUCCGUUGGCUGCUUAUGCCACAGCUAUGGCUUCUAGUGCAGCCAGCUCUGUGCUGUCCACCAAUCUGACUCCAAAUCUUCGCCGAGAACAUCGGCGUCAG
..(((((....((((((((((((.((((......))))...))).)))))))))...)))))..........(((((...........(((((.....)))))))))) ( -38.90)
>DroVir_CAF1 24431 99 + 1
CUGGUGCCGCCACUGGCCUCAUAUGCCACAGCCUUGGCUACCAGUACGGCCAGCUCAGUG---------AAUCUGACGCCCAAUCUGCGGCGUCAGCAUCGCCGACAG
((((.((((..(((((........((((......))))..))))).)))))...((.(((---------(..(((((((((.....).))))))))..)))).))))) ( -37.20)
>DroSec_CAF1 7473 105 + 1
CUGGCUCCUCCGUUGGCCGCUUAUGCCACAGCCAUGGCUUCCAGUGCAGCCAGCUCUGUGAUGUCU-UCAAUCUGACUCCAAAUCUUCGACGAG-ACAUCGUC-CCAG
((((..(....((((((((((...((((......))))....))))..)))))).....(((((((-(......((.......))......)))-))))))..-)))) ( -30.40)
>DroEre_CAF1 7649 108 + 1
CUGGCUCCUCCGUUGGCUGCCUAUGCCACAGCCAUGGCUUCCAGUGCGGCCAGUUCCGUGCUGUCCUCCAAUCUGACUCCGAAUCUUCGCCGAGAACAUCGCCGCCAG
(((((........((((((.........)))))).(((...(((..(((......)))..))).............((((((....)))..)))......)))))))) ( -34.70)
>DroYak_CAF1 7652 108 + 1
CUGGCUCCUCCGUUGGCCGCUUAUGCCACAGCCAUGGCCUCCAGUGCGGCCAGUUCUGUCCUGUCCUCGAAUCUGACUCCGAAUCUGCGCCGUGAACAUCGCCGCCAG
(((((........((((.((....))....)))).(((......((((((((((((.(((..((......))..)))...))).))).))))))......)))))))) ( -33.20)
>DroAna_CAF1 7536 108 + 1
CUGGCUCCUCCGCUGGCCGCCUACGCCACUGCAAUGGCCUCAAGUGCAGCCAGUUCUGUCCUGUCCUCCACUCUGACUCCGAACCUGCGACGGGAACAUCGCCGCCAG
(((((......((((((.((((..((((......))))....)).)).))))))..((((((((((.....((.......))....).)))))).))).....))))) ( -34.50)
>consensus
CUGGCUCCUCCGUUGGCCGCUUAUGCCACAGCCAUGGCUUCCAGUGCAGCCAGCUCUGUGCUGUCCUCCAAUCUGACUCCGAAUCUGCGCCGAGAACAUCGCCGCCAG
(((((......(((((((((....((((......)))).......)))))))))..................................(((((.....)))))))))) (-24.93 = -25.88 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:01 2006