Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,175,186 – 8,175,283 |
Length | 97 |
Max. P | 0.769015 |
Location | 8,175,186 – 8,175,283 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -39.90 |
Consensus MFE | -25.58 |
Energy contribution | -26.20 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.30 |
Mean z-score | -1.68 |
Structure conservation index | 0.64 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8175186 97 - 22407834 GGUGAGCAGCGAUAGCUGGCGGUUGACCUUGUUGCCGGUG---GUGUUGUUGAUGCUGCUGCUAUUGCAAUCUAGUUGCUGCCCAAGUGCGGUGGCGGGC .((.(((((((...((((((..(.......)..)))))).---.))))))).))....(((((((((((.....((....)).....))))))))))).. ( -35.70) >DroVir_CAF1 17451 94 - 1 CGUGAGCAACGAAAGCUGACGGUUGAUUUUGUUGCUGGUG---UUGUUGCUGCCGC---UGCUAUUGCACUCGAGCUGCUGCCCAAAGGCGGUGGCAGGC ....((((((((.(((.(((((......))))))))....---))))))))(((..---(((....))).....((..(((((....)))))..)).))) ( -37.00) >DroPse_CAF1 2172 94 - 1 GGUGCGGAGCGUCAGCUGGCGGCUUGCUUUGUUGCCGGUG------UUGUUGAGGCUGCUGCUGUUGCAGUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC ...((..(((.((((((((((((.......))))))))).------....))).)))(((((....)))))...((..(((((....)))))..))..)) ( -41.50) >DroGri_CAF1 20174 97 - 1 CGUGAGCAGCGAUAGCUGUCGGUUGAUUUUGUUGUUGGCU---GUGUUACUGCCGCUGCCGCUGUUGCACUCAAGCUGCUGUCCAAAAGCGGUGGCAGGC .(((((((((....)))))((((..((......))..)))---)..)))).(((((..(((((.(((.((..........)).))).)))))..)).))) ( -37.10) >DroAna_CAF1 2028 100 - 1 GGUUAGCAGCGAUAGCUGGCGGUUGACUUUGUUGCCGGUGUUGUUGCCGGUGAUGCUGCUGCUGUUGCAAUCUAGCUGCUGGCCAAAUGCGGUGGCGGGC ((((((..((((((((.((((((.......((..(((((......)))))..))))))))))))))))...))))))(((.((((.......)))).))) ( -45.81) >DroPer_CAF1 2242 94 - 1 GGUGCGGAGCGUCAGCUGGCGGCUUGCUUUGUUGCCGGUG------GUGUUGAGGCUGCUGCUGUUGCAGUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC ...((..(((..((.((((((((.......))))))))))------..)))..((((((.......))))))..((..(((((....)))))..))..)) ( -42.30) >consensus GGUGAGCAGCGAUAGCUGGCGGUUGACUUUGUUGCCGGUG____UGUUGUUGACGCUGCUGCUGUUGCAAUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC ........((((((((.((((((...............................))))))))))))))......((..((((......))))..)).... (-25.58 = -26.20 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:58 2006