Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,170,380 – 8,170,486 |
Length | 106 |
Max. P | 0.736605 |
Location | 8,170,380 – 8,170,486 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 96.51 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -23.94 |
Energy contribution | -23.74 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.23 |
Structure conservation index | 0.93 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8170380 106 - 22407834 CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGCCGGCAAAAUGUC .........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -28.50) >DroSec_CAF1 10163 106 - 1 CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGAACGAAACGCAGGCAGCUGCUGGCAAAAUGUC .........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -27.10) >DroSim_CAF1 10751 106 - 1 CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGAACGAAACGCAGGCAGCUGCUGGCAAAAUGUC .........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -27.10) >DroEre_CAF1 10631 106 - 1 CCCUUGUUUGAUAUGCUCAAUGUAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGGUUGCAAAAUGUC ...((((((....((((..(((((.......))))).....)))).....))))))......(((((((((((....)))))((((.(....).)))).)))))). ( -20.60) >DroYak_CAF1 10581 106 - 1 CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAGACACAGGCAGCUGAUGGCAAAAUGUC .((((((((....(((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))))))))).)))..((.....))........ ( -24.80) >consensus CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGCUGGCAAAAUGUC ....((((((...(((((((.(((((((.((((..((((((........))))))..))))..))))))).))))))).....))))))((.....))........ (-23.94 = -23.74 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:54 2006