Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 814,660 – 814,780 |
Length | 120 |
Max. P | 0.587786 |
Location | 814,660 – 814,780 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.06 |
Mean single sequence MFE | -41.18 |
Consensus MFE | -26.03 |
Energy contribution | -25.95 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.50 |
Mean z-score | -1.42 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 814660 120 - 22407834 UGCUGGCGACUGCUCCGAGCAUGCAACUACAACGCCACUGCUAAUCACAAUGCCUGCCGGCCGGAGUACUUCAACCUGGCCGAGGUACUGGUCAGCCAGCUAAUGGCACCUUACGAAACU .(((((((((.......((((.((.........))...)))).....((.(((((..(((((((.((......)))))))))))))).))))).)))))).................... ( -39.10) >DroVir_CAF1 1296 120 - 1 UGUUGGCGCCUGUUGCGCGCCUGUAAUUACAACACACAGGCGAAUCACGUCAAUUGCCGUCCGGAGUAUUUUCAUCUGGCCGAGGUGCUCAUCAGUCAGCUGAUGGCGCCGUAUGAGACG .....((((.....))))((((((...........))))))......((((...(((((.(((((.........))))).)).(((((.((((((....))))))))))))))...)))) ( -46.10) >DroPse_CAF1 1199 120 - 1 UGCUGGCGGCUGCUCCGCGCCUGUAACUACAAUCCGCAGGCAAACCAAAACGCCUGUCGCCAGGAGUACUUCCACCUGGCCGAAGUGCUCGUCAGCCAGCUGAUGGCGCCCUACGAAACU .((.((((((......))((((((...........)))))).........)))).)).((((((.(......).))))))....((((.((((((....))))))))))........... ( -42.90) >DroGri_CAF1 1303 120 - 1 UGCUGGCGUCUGUUGCGCGCCUGUAAUUACAAUGGCCAUGCGAAUCAUAUCCAUUGUCGGCCAGAGUACUUCAAUCUGGCCGAAGUGCUCAUCAGUCAGUUAAUGGCACCGUUUGAAACC .((((((...((..((((...........((((((..(((.....)))..))))))(((((((((.........))))))))).)))).))...)))))).((((....))))....... ( -38.60) >DroMoj_CAF1 1254 120 - 1 UGCUGGCGAUUACUGCGCGCUUGUAACUACAAUCCGCUGGCGAAUCACAUCAAUUGUCGGCCGGAGUACUUCAACCUGGCCGAGGUGCUAAUCAGUCAGCUAAUGGCGCCAUAUGAGACC .((..(((......(....)((((....))))..)))..))........(((....((((((((.((......))))))))))(((((((...((....))..)))))))...))).... ( -37.50) >DroPer_CAF1 1205 120 - 1 UGCUGGCGGCUGCUCCGCGCCUGUAACUACAAUUCGCAGGCAAACCAAAACGCCUGUCGCCAGGAGUACUUCCACCUGGCCGAAGUGCUCGUCAGCCAGCUGAUGGCGCCCUACGAAACU .((.((((((......))((((((...........)))))).........)))).)).((((((.(......).))))))....((((.((((((....))))))))))........... ( -42.90) >consensus UGCUGGCGACUGCUCCGCGCCUGUAACUACAAUCCGCAGGCGAAUCACAACGACUGUCGGCCGGAGUACUUCAACCUGGCCGAAGUGCUCAUCAGCCAGCUAAUGGCGCCCUACGAAACU .((((((..........(((((((...........))))))).....................(((((((((.........)))))))))....)))))).................... (-26.03 = -25.95 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006