Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,163,101 – 8,163,206 |
Length | 105 |
Max. P | 0.995025 |
Location | 8,163,101 – 8,163,206 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -27.49 |
Consensus MFE | -22.58 |
Energy contribution | -22.98 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8163101 105 + 22407834 GGUCGUGCGUCCGGUGCUCCGCUAAAAGUAACAAAAAGUGCACAAAUUGCCGGGAGAAAAUGUUACAUUAACGAUAUUUUCGGUUAAUGCUGAGCACACGGAUAC ........(((((((((((.((.....((((((......(((.....)))(....)....))))))((((((((.....)).)))))))).)))))).))))).. ( -31.70) >DroSec_CAF1 3024 105 + 1 GGUUGUGUGUCCGGUGCUCCGCUAAAAGUAACAAAAAGUGCACAAAUUGCCGGGAGAAAAUGUUACAUUAACGAUAUUUUCGGUUAAUGCUAAGCACACGGAUAC ......((((((((((((..((.....((((((......(((.....)))(....)....))))))((((((((.....)).))))))))..))))).))))))) ( -30.80) >DroSim_CAF1 3023 105 + 1 GGUUGUGCGUCCGGUGCUCCGCUAAAAGUAACAAAAAGUGCACAAAUUGCCGGGAGAAAAUGUUACAUUAACGAUAUUUUCGGUUAAUGCUAAGCACACGGAUAC ........((((((((((..((.....((((((......(((.....)))(....)....))))))((((((((.....)).))))))))..))))).))))).. ( -28.10) >DroEre_CAF1 3514 105 + 1 GUACUCGCGUUCGGUGCUCCGCUAAAAGUAACAAAAAGUGCAUAAGUUGCCGGGAGAAAAUGUUACAUUAACGAUAUUUUCGGUUUCUACUGAGUACACGGAUAC ........(((((((((((((((.............))))....((..((((..((....(((((...)))))...))..))))..))...)))))).))))).. ( -23.52) >DroYak_CAF1 3083 105 + 1 GUUCGUGCGUUCGGUGCUCCGCUAAAAGUAACAAAAAGUGCACAAAUUGCCGGGAAAAAAUGUUACAUUAGCGAUAUUUUCUGUUUCUGCUAAGCACACGGAUAC (((((((.(((..((.....(((((..((((((....(.(((.....)))).........)))))).)))))((.....)).......))..))).))))))).. ( -23.32) >consensus GGUCGUGCGUCCGGUGCUCCGCUAAAAGUAACAAAAAGUGCACAAAUUGCCGGGAGAAAAUGUUACAUUAACGAUAUUUUCGGUUAAUGCUAAGCACACGGAUAC ........((((((((((..((......((((.....(.(((.....))))....(((((((((........))))))))).))))..))..))))).))))).. (-22.58 = -22.98 + 0.40)
Location | 8,163,101 – 8,163,206 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -27.11 |
Consensus MFE | -24.45 |
Energy contribution | -24.49 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.92 |
Structure conservation index | 0.90 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8163101 105 - 22407834 GUAUCCGUGUGCUCAGCAUUAACCGAAAAUAUCGUUAAUGUAACAUUUUCUCCCGGCAAUUUGUGCACUUUUUGUUACUUUUAGCGGAGCACCGGACGCACGACC (..((((.((((((.((((((((.((.....))))))))((((((..........(((.....)))......)))))).....)).))))))))))..)...... ( -31.89) >DroSec_CAF1 3024 105 - 1 GUAUCCGUGUGCUUAGCAUUAACCGAAAAUAUCGUUAAUGUAACAUUUUCUCCCGGCAAUUUGUGCACUUUUUGUUACUUUUAGCGGAGCACCGGACACACAACC ((.((((.((((((.((((((((.((.....))))))))((((((..........(((.....)))......)))))).....)).)))))))))).))...... ( -29.29) >DroSim_CAF1 3023 105 - 1 GUAUCCGUGUGCUUAGCAUUAACCGAAAAUAUCGUUAAUGUAACAUUUUCUCCCGGCAAUUUGUGCACUUUUUGUUACUUUUAGCGGAGCACCGGACGCACAACC (..((((.((((((.((((((((.((.....))))))))((((((..........(((.....)))......)))))).....)).))))))))))..)...... ( -30.09) >DroEre_CAF1 3514 105 - 1 GUAUCCGUGUACUCAGUAGAAACCGAAAAUAUCGUUAAUGUAACAUUUUCUCCCGGCAACUUAUGCACUUUUUGUUACUUUUAGCGGAGCACCGAACGCGAGUAC ........((((((.................(((((((.((((((..........(((.....)))......))))))..))))))).((.......)))))))) ( -21.29) >DroYak_CAF1 3083 105 - 1 GUAUCCGUGUGCUUAGCAGAAACAGAAAAUAUCGCUAAUGUAACAUUUUUUCCCGGCAAUUUGUGCACUUUUUGUUACUUUUAGCGGAGCACCGAACGCACGAAC (..(.((.((((((.(......).........((((((.((((((..........(((.....)))......))))))..)))))))))))))).)..)...... ( -22.99) >consensus GUAUCCGUGUGCUUAGCAUUAACCGAAAAUAUCGUUAAUGUAACAUUUUCUCCCGGCAAUUUGUGCACUUUUUGUUACUUUUAGCGGAGCACCGGACGCACGACC ((.((((.((((((..........((.....))(((((.((((((..........(((.....)))......))))))..))))).)))))))))).))...... (-24.45 = -24.49 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:48 2006