Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,153,990 – 8,154,098 |
Length | 108 |
Max. P | 0.716259 |
Location | 8,153,990 – 8,154,098 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.90 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -20.70 |
Energy contribution | -20.45 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -1.08 |
Structure conservation index | 0.77 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8153990 108 - 22407834 GCUUCUUUUAUAGAGCUUGAUUAGAGCUUCUUGUUGAUUAACUUACCCUGAUCCUCUUCUUUAGAAGAGUAAUGGCCGCAUCUUGGACCAGUUCCGUGUGUGGUGGGA ...((...((..((((((.....))))))..))..))........(((.....((((((....)))))).....(((((((..((((.....)))).)))))))))). ( -30.70) >DroVir_CAF1 22087 89 - 1 CCCUUUAU-------------------GCUCUAGUUAUUUACUCACGCGUAUUCGCUUCUUGAGUAGUGUUAUGGCCGCAUCCUGGACCAUUUCCGUGUGCGGCGGUA ........-------------------...........(((((((.(((....)))....)))))))...(((.(((((((..((((.....)))).))))))).))) ( -26.10) >DroSec_CAF1 20119 89 - 1 GCUUCUUC-------------------GCACUGUUGAUCAACUCACCCGGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA ......((-------------------((.(((((((...........(((......)))))))))).))))(.(((((((..((((.....)))).))))))).).. ( -27.20) >DroSim_CAF1 21882 89 - 1 GCUUCUUC-------------------GCACUGUUGAUCAACUCACCCUAAUCCUCUUCUUUAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUAUGUGGUGGGA ((......-------------------))................(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -23.40) >DroEre_CAF1 19948 89 - 1 GGUUCUUU-------------------GAUCUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCUGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA ......((-------------------((((....))))))....(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -27.90) >DroYak_CAF1 19944 89 - 1 UGCUCUCA-------------------ACACUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA .....(((-------------------((...)))))........(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -26.70) >consensus GCUUCUUU___________________GCACUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA .............................................(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). (-20.70 = -20.45 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:41 2006