Locus 2845

Sequence ID 2L_DroMel_CAF1
Location 8,151,286 – 8,151,376
Length 90
Max. P 0.533388
window4520

overview

Window 0

Location 8,151,286 – 8,151,376
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 80.91
Mean single sequence MFE -17.82
Consensus MFE -11.70
Energy contribution -12.37
Covariance contribution 0.67
Combinations/Pair 1.14
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value -0.00
SVM RNA-class probability 0.533388
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8151286 90 - 22407834
GCAUUUUUGCAGCCGUUUCUUCUG-CGACUUGUUUGAAUAACAAAUUACC-CACAAAUCAAUUUGAGUGAUUGAUUUCUUGGCUCUCGCCCC
(((....))).............(-(((.(((((.....))))).....(-((.(((((((((.....)))))))))..)))...))))... ( -17.20)
>DroSec_CAF1 17356 90 - 1
GCAUUUUUGCAGCCGUUUCUUCUG-CGACUUGUUUGAAUAACAAAUUGCC-CACAAAUCAAUUUGAGUGAUUGAUUUCUUGGCUCUCGCCCC
(((....)))(((((........(-(((.(((((.....))))).)))).-...(((((((((.....)))))))))..)))))........ ( -20.80)
>DroEre_CAF1 17185 90 - 1
GCAACUUUGCAGCCGUUUCUUUUG-UGACUUGUUUGAAUAACAAAUUACC-CACAAAUCAAUUUGAGUGAUUGAUUUUUUGGCUCUCGCCCC
(((....)))(((((........(-(((.(((((.....))))).)))).-...(((((((((.....)))))))))..)))))........ ( -18.40)
>DroWil_CAF1 22832 71 - 1
GCA-UUUUGCGGCCG-----------------UUUGAAUAACAAAUUAGC-AACAAAUCAAUUUGAAUGAUUGAUUUCUUGGCUCUCGAC--
((.-....))(((((-----------------((((.....)))))....-...(((((((((.....)))))))))...))))......-- ( -13.60)
>DroYak_CAF1 17121 91 - 1
GCAAUUUUGCAGUCGUUUCUUCUG-CGACUUGUUUGAAUAACAAAUUACCCCACGAAUCAUUUUGAGUGAUUGAUUUCUUGGCUCUCGCCCC
(((....))).(((((.......)-))))(((((.....)))))...........((((((.....))))))........(((....))).. ( -16.20)
>DroPer_CAF1 18041 80 - 1
----AUUUGCGGCCGUUUUGUGCGGGUAUUUGUUUGAAUAACAAAUUACC-AACAAAUCAAUUUGAAUGAUUGAUUUCUUGGCUC-------
----......(((((.(((((...((((((((((.....)))))).))))-.)))))((((((.....)))))).....))))).------- ( -20.70)
>consensus
GCA_UUUUGCAGCCGUUUCUUCUG_CGACUUGUUUGAAUAACAAAUUACC_CACAAAUCAAUUUGAGUGAUUGAUUUCUUGGCUCUCGCCCC
(((....)))((((...............(((((.....)))))..........(((((((((.....)))))))))...))))........ (-11.70 = -12.37 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:40 2006