Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,148,691 – 8,148,790 |
Length | 99 |
Max. P | 0.604720 |
Location | 8,148,691 – 8,148,790 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.96 |
Mean single sequence MFE | -25.95 |
Consensus MFE | -11.07 |
Energy contribution | -11.82 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.25 |
Mean z-score | -2.37 |
Structure conservation index | 0.43 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8148691 99 + 22407834 UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAGCGGGUAUACGUACACCC-AUACCCCUAUCUAUAUACCUGCUGC ...(((((.........((((........))))--((((......))-----))))))).((((((((((((.........-.............)))))))))))) ( -27.65) >DroSec_CAF1 14820 99 + 1 UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAUCGGGUAUACCUAUACCC-AUACCCCUAUCUAUAUACCUGCUGC ...(((((.(((....................)--))))))).((((-----..((....))...((((((....))))))-....................)))). ( -23.05) >DroSim_CAF1 16384 99 + 1 UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAUCGGGUAUACCUAUACCC-AUACCCCUAUCUAUAUACCUGCUGC ...(((((.(((....................)--))))))).((((-----..((....))...((((((....))))))-....................)))). ( -23.05) >DroEre_CAF1 14673 104 + 1 UCAGUGGCACGCUCUUCUAGAUUCCAACUUCUG--UGGCCAUAUAGCAAUAGCAGCUACAGUGGCGGGUUUACCUAUACCC-AGACCGCUAUCUAUAUACCUGCUGC .(((((((.(((......(((........))))--)))))((((((..(((((.(((.....)))((((........))))-.....)))))))))))....)))). ( -27.60) >DroYak_CAF1 14463 106 + 1 UCAGUGGCACGCUCUUCUAGAUUCCAACCGCUGGCUGGCCAUAUAGCAAUAGCAGCUAUAGCAGCGGGUAUACCCAUACCC-AUACCUCUAUCUACAUACCUGCUGC (((((((.....((.....))......))))))).......((((((.......))))))(((((((((((..........-..............))))))))))) ( -28.46) >DroAna_CAF1 14488 80 + 1 UCAGUGGCACGCUCUUCUAGAUUCCAACCUGU----AGC--------------UGCUACAGCUUCGACUUCAGCUUCAGCUGAUG----UGGCUGUGUAGCU----- .((((((....((.....))...)))..))).----(((--------------(((.((((((...((.(((((....))))).)----)))))))))))))----- ( -25.90) >consensus UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG__UGGCCAUACAGC_____CAGCUAUAGCAGCGGGUAUACCUAUACCC_AUACCCCUAUCUAUAUACCUGCUGC ...(((((..(((....((((........))))...)))......(......).))))).(((.((((((((.......................)))))))).))) (-11.07 = -11.82 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:39 2006