Locus 2843

Sequence ID 2L_DroMel_CAF1
Location 8,147,631 – 8,147,749
Length 118
Max. P 0.555449
window4518

overview

Window 8

Location 8,147,631 – 8,147,749
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 75.06
Mean single sequence MFE -26.09
Consensus MFE -11.57
Energy contribution -11.94
Covariance contribution 0.37
Combinations/Pair 1.20
Mean z-score -1.77
Structure conservation index 0.44
SVM decision value 0.04
SVM RNA-class probability 0.555449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8147631 118 - 22407834
CAACAGGAUCACUCCUGGCAAAUGCCUGGGAA-GCAACAAGGAUUACAUUCUAAAAGAGAAUUUUCUCUUGGCCAAACUCACCAGCAACACAAGGAAAAAAAUGAUCCGAGGAAAUGAC
.....((((((.(((((((....))).)))).-((.....(((......)))..((((((....))))))..............))................))))))........... ( -26.00)
>DroSec_CAF1 13787 118 - 1
CCACAGGAUCACUCCUGGCAAAUGCCUAAGAA-ACAACAAGGAUUACAUCCUAAAAGUGAGUUUCCUCUUGGCCAAACUCACCAGCAUCACUAGGAAAAAUAUGAUCCGAGGAAAUGAC
((...((((((.((((((...((((.......-......(((((...)))))....((((((((((....))..))))))))..))))..))))))......))))))..))....... ( -32.70)
>DroSim_CAF1 15351 118 - 1
CCACAGGAUCACUGCUGGCAAAUGCCUGAGAA-ACAACAAGGAUUACAUACUAAAAGUGAGCUUCCUCUUGGCCAAACUCACCAGAAACAAAAGGAAAAAAAUGAUCCGAGGAAAUGAC
((...((((((..((((((....)))......-...............(((.....))))))(((((.(((.................))).))))).....))))))..))....... ( -22.63)
>DroEre_CAF1 13588 119 - 1
CCACAGGAUCACUCCUGGCAAAUGCCUAGGAGUGUAACGAGGAUUACGUUAUGAAAGUGGGUUUCCUCUUGGCACAACUCACCAGCAGCACCAGGAAAAAAAUGAUCCGGGGAAAUAAC
((...((((((.((((((....(((..((..((((...(((((..((.((((....)))))).)))))...))))..)).....)))...))))))......))))))..))....... ( -37.20)
>DroYak_CAF1 13526 91 - 1
----------------------------GGAUUGUAACGAGGAUUAAAUUAUGAAAGUGGGUUUGCUUUUGGUAUAACUGACCAGAAACGGCAGGAAAAAAAUUAUACGGGGAAAUAGC
----------------------------...(((((............((((....)))).((((((((((((.......))))))...))))))..........)))))......... ( -11.90)
>consensus
CCACAGGAUCACUCCUGGCAAAUGCCUAGGAA_GCAACAAGGAUUACAUUCUAAAAGUGAGUUUCCUCUUGGCCAAACUCACCAGCAACACAAGGAAAAAAAUGAUCCGAGGAAAUGAC
...(((((....)))))...........................................((((((((((((.........))))........(((.........)))))))))))... (-11.57 = -11.94 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:38 2006