Locus 2842

Sequence ID	2L_DroMel_CAF1
Location	8,147,290 – 8,147,383
Length	93
Max. P	0.999264

overview

Window 7

Location	8,147,290 – 8,147,383
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	91.06
Mean single sequence MFE	-20.32
Consensus MFE	-16.89
Energy contribution	-17.93
Covariance contribution	1.04
Combinations/Pair	1.04
Mean z-score	-3.18
Structure conservation index	0.83
SVM decision value	3.47
SVM RNA-class probability	0.999264
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8147290 93 + 22407834
AUAUUCACAUUGCAUGCCACCAAUGCGGUUAUUAUUUGCCAUAAUGAUUGCAAAGCAAAAAAAAAAAAAGGUCAACAUGCAAAGAACUCUGCC
.........(((((((..(((..((((((((((((.....)))))))))))).................)))...)))))))........... ( -17.91)
>DroSec_CAF1 13143 88 + 1
AUAUUCACUUUGCAUGCUACCAAUGCGGUUAUUAUUUGCCAUAAUGAUUGCAAACCAAAA-----AAAAGGUCAACAUGCAAAGAACUCUGCC
.......(((((((((.......((((((((((((.....)))))))))))).(((....-----....)))...)))))))))......... ( -24.50)
>DroSim_CAF1 14029 90 + 1
AUAUUCACUUUGCAUGCCACCAAUGCGGUUAUUAUUUGCCAUAAUGAUUGCAAAGCAAAAA---AAAAAGGUCAACAUGCAAAGAACUCUGCC
.......(((((((((..(((..((((((((((((.....)))))))))))).........---.....)))...)))))))))......... ( -22.09)
>DroEre_CAF1 12961 86 + 1
AUAUUCACUUUGCAUGCCACCAAUGCGGUUAUUAUUUGCCGUAAUGAUUCCCAAGCA-------AAAAAGGUCAACAUGCAAAGAACUCUGCC
.......(((((((((..(((..((((((........)))))).((.....))....-------.....)))...)))))))))......... ( -22.20)
>DroYak_CAF1 12870 85 + 1
AUAUUCACAUUGCAUGCCACCAAUGCGGUUAUUAUUUGCCAUAAUGAUUCCCCAA-A-------AAAAAGGUCAACAUGCAAAGAACUCUGCC
.........(((((((..(((..((.((..((((((......))))))..)))).-.-------.....)))...)))))))........... ( -14.90)
>consensus
AUAUUCACUUUGCAUGCCACCAAUGCGGUUAUUAUUUGCCAUAAUGAUUGCAAAGCAAAA____AAAAAGGUCAACAUGCAAAGAACUCUGCC
.......(((((((((..(((..((((((((((((.....)))))))))))).................)))...)))))))))......... (-16.89 = -17.93 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:37 2006