Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,146,531 – 8,146,633 |
Length | 102 |
Max. P | 0.514819 |
Location | 8,146,531 – 8,146,633 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -14.99 |
Energy contribution | -16.35 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.20 |
Mean z-score | -1.12 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8146531 102 + 22407834 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACGAAGUGUUGCUAUUCAAAUCGCAAUACAAAGUGGUUCAAUGGUUGCUGCCAAAGACUUUAG----U .....(((((((((((((.....))..................(((((((..........)))))))...)))))))..((((....)))).......)))----) ( -23.50) >DroSec_CAF1 12409 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAGCGAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U ...(((((((((.....................))))))))).(((((((..........))))))).....((((...((((....))))..))))....----. ( -24.50) >DroSim_CAF1 13285 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACCAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U .....(((((((((((((.....))..................(((((((..........)))))))...)))))))..((((....)))).......)))----) ( -23.50) >DroEre_CAF1 12222 102 + 1 UCUUCGCUGAAGCCGCACAAUUAGUACUUAAUAAUUCAACAAAGUGUUGCUAUUCAAACCGCAAUACAGAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG----U .....(((((((((((..(((((........))))).......(((((((..........)))))))...))))))...((((....))))......))))----) ( -21.10) >DroYak_CAF1 12111 102 + 1 UCCUCGCUGGAACCACACAAUUAGUACUUAAUAGUUCAACAAUGUGUUGCUAUUCAAACCGCAAUACAGAGUGGCUCAAUGGUUUCUGCCAAAGACCUUAG----U .....((((((.((((.......(.(((....))).).....((((((((..........))))))))..)))).))..((((....)))).......)))----) ( -21.80) >DroAna_CAF1 11626 88 + 1 ------------CCACAAAA-----AAUAAAUAGUUU-ACAAAGUGCAGCGGUUCAAAGUCGAGUACAGAGUGGUUCAAUGGCUUCUUAUAGAGUACCUCGCCGAC ------------((((...(-----(((.....))))-.....((((..(((.......))).))))...)))).....((((.................)))).. ( -11.03) >consensus UCCUCGCUGGAACCACACAAUUAGUACUUAAUAUUUCAACAAAGUGUUGCUAUUCAAACCGCAAUACAAAGUGGUUCAAUGGUUUCUGCCAAAGACCUUAG____U .........(((((((((.....))..................(((((((..........)))))))...)))))))..((((....))))............... (-14.99 = -16.35 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:36 2006